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Filtering by: Contributor Penaluna, Brooke Subject Environmental monitoring

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets"

Creator:

Hauck, Laura L., Weitemier, Kevin A., Penaluna, Brooke E., Garcia, Tiffany, and Cronn, Richard

Abstract:

This dataset contains the taxonomic classifications of environmental DNA (eDNA) sequences obtained from Fall Creek, Oregon, via microfluidic multiplex PCR (Fluidigm Access Array) and high-throughput sequencing. It is accompanied by electrofishing counts taken at the same time as the eDNA samples. Metadata and R scripts are provided to analyze the...

Resource Type:

Dataset
Supplemental data to "Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding"

Creator:

Weitemier, Kevin A.

Abstract:

This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by...

Resource Type:

Dataset