The reliability and sensitivity of enzyme-linked immunosorbent
assay (ELISA) in the detection of ilarvirus (isometric labile ringspot
virus) subgroup B and prune dwarf virus (PDV) isolates in Prunus and
Malus species has been well established. To use this technique in
large scale virus indexing programs more information was required on...
Domestic violence (DV) is a major social and public health issue in countries such as India and Pakistan where patriarchy is the way of life and cultural norms, and beliefs hold a greater say in community decision-making. Women in these countries are discriminated against from birth and face hurdles in...
Pseudomonas syringae is a Gram-negative bacterium that can infect a variety of important crops. Infection by P. syringae is dependent on a type III secretion system (T3SS) that delivers effector proteins to plant cells to suppress host defenses. Previous work has shown that, in the presence of simple sugars, specific...
Hypersensitive response-like (HR-like) needle reactions to infection by the white pine blister rust pathogen, Cronartium ribicola, have been reported for several species of five needle pines native to western North America. The best-studied examples are in Pinus monticola and P. lambertiana. In these species a "needle spot" phenotype has been...
Agrobacterium tumefaciens and Rhodococcus fascians are plant pathogenic bacteria that can induce crown and leafy galls on plants, respectively. Infection by these bacteria results in disfigured, unsellable plants, leading to significant economic losses to the nursery industry. A. tumefaciens and R. fascians are capable of infecting a broad range of...
The fate and transport of engineered nanoparticles (ENPs) such as titanium dioxide (TiO₂) are of concern due to their increasing use in consumer products. Although analytical methods for detection and quantification of ENPs in environmental matrices are being developed, these methods are difficult, time consuming, and not easily validated for...
Hepatocellular carcinoma (HCC) is one of the leading causes of cancer death in the United States. Patients with cirrhosis are more likely to develop HCC. More than 80% of HCC patients are found have preexisting cirrhosis. The prevalence of cirrhosis increased from 0.26% to 0.3.% between 1999 to 2010 and...
Modern technology has enabled the advancement of biological research through the use of powerful machines and computers as well as innovative computer programs. Advances in sequencing technology and software enable us to make de novo assemblies of organism genomes, and the development of specialized computer programs can automate routine but...
Unmet healthcare needs and/or delays in needed care are widespread among patients with serious mental illness (SMI). Mental healthcare delivery has changed dramatically over the last two decades. Although access to mental health specialists remains challenging, mental healthcare is now increasingly provided in primary care settings. However, it is unclear...
Symbiosis is the close and protracted interaction between organisms. The molecular interactions that occur during symbiosis are complex with multiple barriers that must be overcome. Many Gram-negative, host-associated bacteria use a type III secretion system to mediate associations with their eukaryotic hosts. This secretion system is a specialized apparatus for...
In ponderosa pine (Pinus ponderosa) forests of the western United States, prescribed fires are used to reduce fuel loads and restore historical fire regimes. The season in which prescribed burns are performed and the interval between burns can have complex consequences for the ecosystem, including soil carbon cycling through the...
Background: Prenatal care (PNC) is an important preventive health service that can influence the health of the four million women who give birth annually in the United States, and the health their infants. Despite efforts to increase women’s access to PNC services, significant disparities in PNC utilization and maternal/child health...
Calcium activated proteases, or calpains, are activated in cardiac muscles under conditions of ischemia/reperfusion and hypoxia. Their activity in skeletal muscle under similar conditions is poorly understood. We tested the hypothesis that hypoxia elevates calpain-mediated proteolysis in isolated glycolytic (extensor digitorum longus, EDL) and oxidative (soleus, SOL) mouse muscles studied...
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Hui Hu, Author
ACKNOWLEDGEMENTS
I greatly appreciate my major professor, Dr. Jeff
The United States is a global leader in agricultural productivity. Much of its productivity growth can be attributed to public investments in agricultural research and development, starting in the 19th century and continuing until today. Past studies have shown high returns to agricultural research investments, but publicly funded agricultural research...
In intensively managed forest plantations in the northern Oregon Coast Range, herbicides are often applied during site preparation and early stand regeneration to reduce competition for resources for planted conifer seedlings. In addition to reducing competition for crop trees, herbicide applications may affect soil processes including decomposition and nutrient cycling,...
Low concentrations of dissolved copper have been shown to adversely
affect the olfactory system of endangered salmonids, impairing their ability to avoid predators and likely increasing predation. It is believed that only the free ionic (Cu2+ free) and weakly complexed forms are bioavailable to organisms; these forms typically account for...
Oomycetes are some of the most devastating pathogens, causing upwards of billions of dollars of damage each year to plants. They also diminish ecological diversity and health through the destruction of trees and shrubs. The genome sequence of Pseudoperonospora cubensis, an obligate plant pathogen and causative agent of downy mildew...
The purpose of this study was twofold. First, to determine if planned
interventions could increase untrained undergraduate students' use of positive and
specific skill feedback while a teaching fundamental motor skill to children who are
disabled. Second, to qualitatively assess the effect of specific verbal feedback on
student motor performance....
Forest soils contain a substantial portion of global terrestrial carbon stores. Forest management can influence the soil carbon pool and how soil organic matter functions. The long-term productivity of forests is an ongoing goal where land managers utilize biomass and timber. A site-specific understanding of intensively managed forests can ensure...
Many important policy problems entail linkages among multiple economic sectors, and require the use of a general equilibrium economic modeling framework. This economic approach is appropriate when the market for any one good or service is linked to numerous other goods and services, and back to fundamental inputs such as...
Eugene Water and Electric Board (EWEB) located in Eugene, Lane County, Oregon, is developing a voluntary landowner incentive program that will provide monetary incentives to non-industrial private forest (NIPF) owners in the McKenzie River Watershed, EWEB’s drinking water source for the metropolitan area of Eugene, to promote good stewardship of...
The discovery of novel compounds with antibacterial properties continues to be critically important.3 One potential source of such compounds is the cryptic genome of fungi known to produce biologically active molecules. A kmt6 mutant of the cereal pathogen Fusarium graminearum was previously developed through a histone H3 lysine 27 methyltransferase...
Pantoea agglomerans pathovar betae (Pab) is a bacterium that causes galls on the roots of beet plants, resulting in reduced marketability of beet roots and crop loss. Pab uses a type III secretion system (T3SS) to infect and cause galls on beets. The T3SS is a molecular syringe-like structure that...
Plant pathogenic Rhodococcus species are persistent pathogens able to cause severe growth deformities on a large range of hosts. The most well studied species, R. fascians is predicted by current models to synthesize a mixture of cytokinins that act to directly perturb the hosts' hormone balances, which results in abnormal...
Health disparity scholars and researchers call to expand the conceptualization of health disparities research beyond the predominant and long-standing race-based analyses. The call requests the inclusion of frameworks and theories that reflect the complex, multi-level and multifactorial social processes that yield health disparities. Intersectionality is a theoretical framework that is...
Bacteria are critical to the health of eukaryotes and the ecosystems in which they persist. Some symbiotic interactions are mutualistic in which both microbe and host benefit from the partnership. Other interactions are parasitic, and the microbe typically benefits at a cost to the host. Rhodococcus is a genus of...
Research Objective: Nearly 60 million people in the United States reside in a rural area. Residents in rural areas have higher rates of chronic disease, risky health behaviors, disability, infant mortality, and age-adjusted mortality than their urban counterparts. Health insurance and access to care mitigate those risks, in part because...
Symbioses are a spectrum of interactions between organisms living in closeassociation. These intimate interactions range from mutualism, in which bothorganisms benefit, to parasitism, where one organism benefits at the expense ofthe other. Horizontal gene transfer is the acquisition of genes independent ofvertical transmission and demonstrably promotes the transition of bacteria...
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Jeff H. Chang
Symbioses are a spectrum of interactions between organisms living in close
Symbioses between microbes and multicellular eukaryotes are found in all biomes, and encompass a spectrum of symbiotic lifestyles that includes parasitism and disease, commensalism, and mutually beneficial interdependent host-microbe relationships. Regardless of outcome, these symbiotic lifestyles are governed by a complex molecular "courtship" between microbe and potential host. This courtship...
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________________________________________________________________________
Jeff H. Chang
Symbioses between microbes and multicellular eukaryotes are found in all
Gall-associated phytopathogens have unique evolutionary histories that haveshaped both their modes of infection and genomic structures. Pathogenicity of the gall-associated plant pathogens of the Rhodococcus, Agrobacterium, and Rathayibactergenera is mediated by horizontally acquired virulence loci. The relative ease of gainand loss of the virulence loci has confounded accurate characterization of...
Small mountainous watersheds are disproportionate sources of land-derived particulate organic matter (POM) to long-term sinks like lake bottoms and the ocean. As such, these ecosystems are an essential component of the global carbon cycle. The burial of POM in lacustrine and marine sediments contributes to the drawdown of atmospheric CO2...
In the realms of psychology and sociology two new theoretical models have arisen to describe the forces influencing altruistic human behavior. The first Empathy-Altruism Hypothesis (EAH), by C.D. Batson. The second is the Conceptual Continuum of Altruism (CCA), by K.R. Monroe. Both models have proven to be highly useful in...
The focus of this research concentrates on enhancement
of the LOGSIM mechanized log harvesting system
simulator. Enhancement of software focuses on overall
improvement of the user environment as well as improvement
of the performance and capabilities of the simulation
package.
An enhanced version of the front-end interface
program is developed...
I conducted a multi-scale evaluation of aspen – bird relationships in the northern ungulate winter range of the northern Yellowstone ecosystem during June 2001-03. Questions addressed were: (1) Does bird diversity increase with conifer presence in aspen stands? (2) Given known habitat selection cues, are migrating birds passively intercepted by...
Background. Total knee arthroplasty, or replacement, is a common, generally successful, and expensive procedure. Tools to predict outcomes following orthopedic procedures are abundant, yet no commonly used assessment accounts for an individual’s propensity to engage in adaptive health behavior. The 13-item Patient Activation Measure (PAM) questionnaire is a tool that...
Quantifying labile phosphorus (P) pools in biosolids is needed to manage biosolids for both agronomic and environmental purposes. Phosphorus indices originated in an effort to protect surface water quality from-non-point-agricultural P inputs. The objectives of this research were to: (1) evaluate soil test components of the western Oregon P index...
PURPOSE: To compare glenohumeral joint position sense (JPS), concentric internal (IR) and external rotation (ER) strength, functional ability, and level of satisfaction in patients who underwent three types of glenohumeral capsulorrhaphy with age-matched controls. RESEARCH DESIGN: Four 4x2 and two 4x3 ANOVAs were used to identify differences in JPS and...
The Willamette Valley of Oregon has high rates of winter precipitation that cause
leaching losses of residual fertilizer nitrogen (N) as nitrate (NO₃). Cover crops may have
potential to mitigate N loss. Shallow groundwater was sampled for 11 years from plots
planted in summer vegetables with and without winter cover...
Full Text:
AN ABSTRACT OF THE THESIS OF
Jeff Feaga for the degree of
The Willamette Valley of Oregon has high rates of winter precipitation that cause
leaching losses of residual fertilizer nitrogen (N) as nitrate (NO₃). Cover crops may have
potential to mitigate N loss. Shallow groundwater was sampled for 11 years from plots
planted in summer vegetables with and without winter cover...
The Willamette Valley of Oregon has high rates of winter precipitation that cause leaching losses of residual fertilizer nitrogen (N) as nitrate (NO₃). Cover crops may have potential to mitigate N loss. Shallow groundwater was sampled for 11 years from plots planted in summer vegetables with and without winter cover...
Vegetation provides food for many insects, and many insects serve as food for bats. We investigated the linkages among these three trophic levels in riparian areas throughout the Oregon Coast Range by examining the influence of vegetation cover, composition, and structure on the activity of nocturnal insects and bats, the...
Although science is widely accepted as a fundamental source of information underlying decisions about forest management and conservation, considerably less attention has been paid to the inevitable role that normative values and beliefs play in such decisions. This thesis highlights the normative dimensions of "ecological forestry," a strategy of forest...
The Upper Devonian Fenstermaker Limestone is a thickening-upward sequence
of interbedded sandy intrapelsparite and subordinate calcareous siltstone and mudstone
which averages 190 ft (58 m) thick in the northern Antelope Range. The Fenstermaker
Limestone is revised and restricted herein to include only those rocks above a basinal
shale sequence of...
Full Text:
Devonian Fenstermaker Limestone, Eureka County, Nevada
AN ABSTRACT OF THE THESIS OF
Jeff L. Waldman for
Glaciers are effective reservoirs because they moderate variations in runoff and
supply reliable flow during drought periods. Thus, there needs to be a clear
understanding of the influence of glacier runoff at both the basin and catchment scale.
The objectives of this study were to quantify the late summer contributions...
This thesis is a collection of four submitted manuscripts that present
methods to assist forest ecosystem service managers wanting to develop
operational sampling, monitoring, and production plans for a set of
specific quantifiable ecosystem services, which are formulated as a
series of general multi-objective optimization problems. The problems
are solved...
This project is an interactive environment which allows the user to explore various sound generation techniques. The three methods of sound generation used are (1) FM synthesis, (2) Additive synthesis, and (3) Karplus/Strong synthesis of plucked strings. The project also provides the capability to display the generated sound waveforms and...
The U.S. Department of Health and Human Services has made the promotion of regular physical activity a national health objective, and experts believe that physical education can play a significant role in the promotion of physical activity. Feasible measurement tools to assess physical activity behavior, by physical educators, are lacking....
A fiber optic fluorometer utilizing a double-fiber optic probe
was constructed. The absolute fluorescence signal and effective
collection efficiency are approximately one fifth those of typical
cuvette fluorometers and agree with those predicted by theory. A
quinine sulfate calibration curve shows linearity from a detection
limit of 10 pg/mL to...
As more features are being integrated into mobile platforms, the demand for
long battery life during standby mode has been increasing. Light load efficiency
becomes one of essential features in today's DC-DC converter. The most effective
method to improve light load efficiency is to operate the DC-DC converter under
pulse-frequency-modulation...
Central Oregon has attracted attention as a potential location for a biomass industry based on a locally fixed source of western juniper (Juniperus occidentalis Hook) feedstock. This study identifies a supply of juniper from private lands to determine how much of the available juniper is economically supplied at alternative prices...
Two studies were initiated in June of 1981 in order to gain greater understanding of the growth and fruiting habits of field grown strawberries in Oregon's Willamette Valley.
Yield component analysis of 'Benton', Oregon's leading cultivar and an advanced breeding selection, 'OR-US 4356' was conducted during the first (1981) and...
A comparison of two novel demodulators. The first is a basic zero crossing demodulator,
as introduced by Beards. The second is an approach proposed by Hovin. The two demodulators
are compared to each other and to the conventional method of demodulation.
In the wake of policies catalyzing settlement through agrarian-based land ‘improvement’, private property rights absorbed water resources through Western water law. Consequently, these dominant user regimes and the doctrine of prior appropriation allocated nearly 80 percent of freshwater resources to agricultural use. Following enactment of the Endangered Species Act (ESA)...
This thesis reports on computational research in two different areas. I first discuss the Min-protein system found within Escherichia coli. Following this I discuss an extended investigation into improving free energy functionals that are used within Classical Density Functional Theory in order to model water. Chapter 2 examines the dynamics...
Oregon’s Protection from Fire Program is the largest program within the Oregon Department of Forestry (ODF). The program provides wildfire protection on about 15.8 million acres of mostly privately-owned Oregon forestland. Private and state interests in protecting Oregon forests from fire have been intertwined since the early 1900s when ODF...
At the conclusion of the novel The Healing of America, T.R. Reid challenges the American people to decide whether health care is a human right prior to any appropriate service reform occurring. From Reid’s perspective, the design of any nation’s health service system is primarily dictated by the morals of...
The extent and severity of wildfires in forested regions are increasing throughout many regions on the planet, including western North America. High-severity wildfires directly affect soils and vegetation by altering soil hydraulic properties, reducing soil organic matter, exporting carbon and nitrogen, and killing trees and understory vegetation. These impacts can...
NADPH-cytochrome P-450 reductase, an important enzyme in the
cytochrome P-450-dependent microsomal monooxygenase system, was
purified from insecticide-resistant (R) and -susceptible (S) house
flies (Musca domestica, L.) and from the black blow fly (Phormia
regina, Weigen). Proteolytic degradation to a P-450 - inactive form
of the reductase was reduced during the...
Soils of 49 agricultural and 2 "native condition" sites in the Lower Umatilla Basin,
Oregon were sampled for nitrate-nitrogen, ammonium-nitrogen, chloride, and pH
beginning in Fall of 1992. Several sites were sampled in Spring and Fall 1993 in order to
indicate movement or loss of residual soil nitrogen over time....
Batch cultures of Candidatus Pelagibacter ubique were grown under iron-, organosulfur-, and nitrogen-limiting conditions to understand how this ubiquitous marine bacterium responds to and interacts with environments where growth is limited by the availability of these nutrients. Global gene expression was monitored using microarrays and quantitative mass spectrometry to observe...
This thesis describes a Mossbauer effect and electron
paramagnetic resonance study of iron (III) tetraphenylporphyrinatobenzenethiolate
benzene thiol, an analog compound
for bacterial cytochrome P-450. The compound is unusual in
that it provides a model for the two ferric reaction states
of cytochrome P-450. The iron in the model compound exhibits...
Streams and rivers play a critical role in global carbon (C) cycling by processing, storing, and transporting C. Headwater streams which make up more than 95% of the length of streams and rivers worldwide have disproportionate influence on fluvial C dynamics. The hyporheic zone (HZ) of headwater streams is a...
The increasing human demands on natural resources, in combination with uncertainties about ecosystem dynamics due to global change, has led the scientific community to conclude that new approaches in understanding of ecological systems are needed to tackle environmental issues in an efficient manner. One development that has received more attention...
Forest soils and topography have long been known to influence forest productivity in complex terrain such as Oregon’s Coast Ranges. Incorporating physical site characteristics into predictions of forest growth and yield, however, has been problematic because of the high spatial variability of soil properties and the challenges associated with representing...
What constitutes quality of learning in primary care? A
social systems view of that central question regards the
relationships between dimensions of learning, purposes of
primary care, and quality of practice. The question of
learning quality was approached in three ways. First,
perceptions of learning quality were elicited through
recorded...
Biotic and abiotic processes at continent-ocean interfaces cycle a disproportionate mass of carbon and nutrients relative to their global surface area, and microbial activity is a principal determinant of organic and inorganic matter flux in these transition zones. Most studies using modern high-throughput ‘omics techniques to link microorganisms with costal...
As Europeans settled the Willamette Valley in the 1800s, they began to simplify Oregon's largest river contained wholly within state boarders—the Willamette. The river lost miles of channels from dikes, dams, and development. Some channels vanished under concrete. Others became meander scars, or shallow, dry depression in the land where...
Declared out of print December 2009. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalog
Wildfire greatly impacts the composition and quantity of organic carbon stocks within watersheds. Most methods used to measure the contributions of fire altered organic carbon–i.e. pyrogenic organic carbon (Py-OC) in natural samples are designed to quantify specific fractions such as black carbon or polyaromatic hydrocarbons. In contrast, the CuO oxidation...
The scope for fishing firms operating in an output controlled fishery, with tradable rights, and facing world prices, to augment profit is limited inter alia to a search for alternative input configurations that lower harvesting costs. This paper provides evidence of technical change in the New Zealand rock lobster fishery....
Over the course of the last century, a successful history of fire suppression has contributed to unsuccessful present day control over wildfire. In the absence of fire and the janitorial and ecological services it provides, drier inland forests are shifting in species composition and exceeding densities that cannot survive and...
Four sampling techniques were evaluated to estimate clover aphid, Nearctaphis bakeri
(Cowen), abundance in red clover fields in the Willamette Valley. The Berlese funnel method
detected one to four times more aphids than other sampling techniques. Visual assessment
often underestimated the high aphid densities during the flowering and seeding of...
Sampling techniques were evaluated to quantify immature mint flea beetle (MFB), Longitrsus waterhousei Kutschera (Coleoptera: Chrysomelidae), on peppermint (Mentha piperita L.), in central Oregon. During the study period, 1985-1988, soil samples of 350 cm³ were effective for collecting immature MFB. Sifting soil samples through screens was effective for estimating post-feeding...
Isothiocyanates (ITCs) are produced by roots in a variety of agricultural plants, such as those within the Brassicaceae family. ITCs act as fumigants, and are used to control microbial plant pathogens by adding brassica-origin seed meal to soil prior to replanting. However, there is suggestion that the presence of residual...
Cooperative behaviors in bacteria are increasingly appreciated for their relevance to microbial ecology and utility as model systems for social evolution. One example is the secretion of siderophores, a structurally diverse group of compounds that chelate extracellular iron. Siderophore production is considered cooperative because the benefits can be shared with...
A supply and demand model for the sweet cherry industry in Wasco County, Oregon and two investment valuation models are used to value and assess the risk of investments in high-density sweet cherry orchard establishment and production from the producer perspective. The supply and demand estimation finds the cherry price...
William James came of age at a time of great social and intellectual change in the United States. During this period, new professional identities proliferated, and a new culture of professionalization developed with important ramifications for conceptions of individual and social identity. Professionalization was also closely related to key intellectual...
The PATH algorithm, which is the efficient dynamic
programming algorithm developed by Paredes and Brodie
(1987) was interpreted from a different point of view.
This modification of the PATH algorithm by the calculus of
variations vastly diminished the calculation task and
memory required to store optimal stands at each stage....
Shallow subsurface flow and surface runoff are spatially and temporally variable in forested environments. The location and timing of this runoff depends on both site characteristics (e.g., vegetation, soil texture, geology, and topography) and on time-varying conditions (e.g., soil water content, precipitation type, duration, magnitude, and intensity). Forest management activities...
Remote sensing techniques have been applied extensively in geospatial investigations, but their use in measuring soil physical attributes has been far less explored. Soil particle size distributions (PSD) are indispensable in modeling pedological and hydrological processes as well as biodiversity. However, estimation of PSD via gravimetric measurement methods, the standard...
I conducted field studies to determine the effect of insect herbivory and
intraspecific plant competition on ragwort Senecio jacobaea. The objectives were to
determine the patterns and causes in the distribution of the ragwort flea beetle
Longitarsus jacobaeae foraging among varying densities of ragwort, to measure the
behavioral and numerical...
Black raspberry (Rubus occidentalis L.) is a US Pacific Northwest specialty crop prized for its unique flavor profile and nutritional attributes. A major obstacle for the raspberry industry is Black raspberry necrosis virus vectored by the large raspberry aphid (Amphorophora agathonica). Market expansion depends on production, which is currently hindered...
Due to the effective antimicrobial properties of silver nanoparticles they represent a significant proportion of all consumer-‐related nanomaterials. The introduction of silver nanoparticles from these products into domestic and industrial wastewater streams poses potential complications for biological treatment systems. A critical component of biological treatment that is extremely sensitive to...
Understanding the mechanisms controlling colloid transport and deposition in the vadose zone is an important step in protecting our water resources. Colloid transport in unsaturated porous media was studied using X-Ray Microtomography (XMT), which is a non-destructive imaging technique that provides three-dimensional images at a resolution on the order of...
Public opinion is central to the formation of public higher education, particularly public higher education funding policy. However, extant research indicates that an enormous gap exists between public higher education policymakers and the general public, resulting in misunderstanding and serious challenges for public higher education funding. This analysis builds on...
Cydia latiferreana Wlshm. is recognized as the key
insect pest of cultivated filbert (hazelnut) in Oregon.
The purpose of this study was to obtain information on
mating and oviposition behavior of the adult insect, to
calculate the lower temperature threshold and degree-days
required for egg development, and to develop an...
The frequency of devastating disasters has increased in the United States due to the presence of climate change. Human subject research is often conducted in these post-disaster areas to gain valuable data and insights. In recent years, discourse regarding the ethical nature of research conduct in these exposure areas has...
The purpose of this research is to hydraulically characterize an engineered wetland in Albany, Oregon. The wetland receives treated wastewater from both Albany Millersburg Water Reclamation Facility (AMWRF) and ATI Wah Chang. AMWRF's water is municipal waste water. ATI Wah Chang's water comes from its nearby metal processing plant. The...