Since its introduction in France 10 years ago, the yellow-legged Asian bee-hawking hornet Vespa velutina has rapidly spread to neighboring countries (Spain, Portugal, Belgium, Italy, and Germany), becoming a new threat to beekeeping activities. While introduced species often leave behind natural enemies from their original home, which benefits them in...
Bird communities are influenced by local and regional processes. The degree to which communities are dynamic has implications for projecting responses in community composition as birds track geographic shifts of their habitats. Historic datasets offer a legacy of information that can be used to quantify changes over time in avian...
Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate. One approach that is likely to improve the status quo involves the use of ontologies to standardize...
Many microbial, fungal, or oomcyete populations violate assumptions for population
genetic analysis because these populations are clonal, admixed, partially
clonal, and/or sexual. Furthermore, few tools exist that are specifically designed for
analyzing data from clonal populations, making analysis difficult and haphazard.
We developed the R package poppr providing unique tools...
Each year, over 45 countries export 30 million fish from coral reefs as part of the
global marine ornamental aquarium trade. This catch volume is partly influenced
by collection methods that cause mortality. Barotrauma in fish resulting from forced
ascent from depth can contribute to post-collection mortality. However, implementing
decompression...
Benthic infaunal communities are important components of coastal ecosystems. Understanding the relationships between the structure of these communities and characteristics of the habitat in which they live is becoming progressively more important as coastal systems face increasing stress from anthropogenic impacts and changes in climate. To examine how sediment characteristics...
The seed oil of meadowfoam, a new crop in the Limnanthaceae family, is highly enriched in very long chain fatty acids that are desaturated at the Δ5 position. The unusual oil is desirable for cosmetics and innovative industrial applications and the seed meal remaining after oil extraction contains glucolimnanthin, a...
Biotic resistance is the idea that native species negatively affect the invasion success
of introduced species, but whether this can occur at large spatial scales is poorly
understood. Here we re-evaluated the hypothesis that native large-bodied grouper
and other predators are controlling the abundance of exotic lionfish (Pterois volitans/miles) on...
Meniscal tears are a common cause of stifle lameness in dogs. Use of autologous
synoviocytes from the affected stifle is an attractive cell source for tissue engineering
replacement fibrocartilage. However, the diseased state of these cells may impede
in vitro fibrocartilage formation. Synoviocytes from 12 osteoarthritic (“oaTSB”) and
6 normal...
To determine effects of intraarticularly administered tiludronate on articular cartilage in vivo, eight healthy horses were injected once with tiludronate (low dose tiludronate [LDT] 0.017 mg, n = 4; high dose tiludronate [HDT] 50 mg, n = 4) into one middle carpal joint and with saline into the contralateral joint....
Consumer-grade GPS units are a staple of modern field ecology, but the relatively large error radii reported by manufacturers (up to 10 m) ostensibly precludes their utility in measuring fine-scale movement of small animals such as insects. Here we demonstrate that for data collected at fine spatio-temporal scales, these devices...
Salmon and other anadromous fish are consumed by vertebrates with distinct life history strategies to capitalize on this ephemeral pulse of resource availability. Depending on the timing of salmon arrival, this resource may be in surplus to the needs of vertebrate consumers if, for instance, their populations are limited by...
Caribbean coral reefs have deteriorated substantially over the past 30 years, which is broadly attributable to the effects of global climate change. In the same time, Indo-Pacific reefs maintain higher coral cover and typically recover rapidly after disturbances. This difference in reef resilience is largely due to much higher coral...
Despite knowledge that concerted evolution of high-copy loci is often imperfect,
studies that investigate the extent of intragenomic polymorphisms and comparisons
across a large number of species are rarely made. We present a bioinformatic pipeline
for characterizing polymorphisms within an individual among copies of a high-copy
locus. Results are presented...
INTRODUCTION: Tissue engineering is a new methodology for addressing meniscal
injury or loss. Synovium may be an ideal source of cells for in vitro meniscal fibrocartilage
formation, however, favorable in vitro culture conditions for synovium must be
established in order to achieve this goal. The objective of this study was...
Anecdotal accounts of tiludronate administration via intravenous regional limb perfusion (IVRLP) exist despite a lack of information regarding safety for synovial structures in the perfused area. The objective of this study was to determine whether tiludronate concentrations in synovial structures after IVRLP with low dose (0.5 mg, LDT) or high...
Introduction. Age is the primary risk factor for major human chronic diseases, including cardiovascular disorders, cancer, type 2 diabetes, and neurodegenerative diseases. Chronic, low-grade, systemic inflammation is associated with aging and the progression of immunosenescence. Immunosenescence may play an important role in the development of age-related chronic disease and the...
This article describes the motivation, design, and progress of the Journal of Open Source Software (JOSS). JOSS is a free and open-access journal that publishes articles describing research software. It has the dual goals of improving the quality of the software submitted and providing a mechanism for research software developers...
This dataset contains a draft assembly of the common milkweed (Asclepias syriaca) nuclear genome, linkage group information, and gene family counts for Asclepias and related species. The genome assembly is accompanied by annotation of gene models, repeat models, transfer RNAs, and open reading frames, and mapping information of Asclepias transcripts,...
This dataset is based on quantitative PCR (qPCR) output. Output from all qPCR was compiled in this dataset and kept as the original. Information about sampling time, id, concentration, sites and a conversion of the quantity in femtograms were added as complement to the qPCR output to facilitate data analysis
This data contains large supplementary tables for the PhD dissertation of Dariia Vyshenska. Title of the Dissertation: "Identification of Cervical Cancer Key Regulators using Network Biology Approach"
The dataset contains data from two types of research.
Research #1: Identification of bacterial regulators of cervical cancer gene expression. It contains microbial...
Benthic infaunal communities are important components of coastal ecosystems. Understanding the relationships between the structure of these communities and characteristics of the habitat in which they live is becoming progressively more important as coastal systems face increasing stress from anthropogenic impacts and changes in climate. To examine how sediment characteristics...
Full Text:
characteristics on the composition of soft-sediment intertidal
communities in the northern Gulf of Mexico. PeerJ
Biotic resistance is the idea that native species negatively affect the invasion success
of introduced species, but whether this can occur at large spatial scales is poorly
understood. Here we re-evaluated the hypothesis that native large-bodied grouper
and other predators are controlling the abundance of exotic lionfish (Pterois volitans/miles) on...
Full Text:
. PeerJ, 2, e348. doi:10.7717/peerj.348
10.7717/peerj.348
PeerJ
Version of Record
http
Anecdotal accounts of tiludronate administration via intravenous regional limb
perfusion (IVRLP) exist despite a lack of information regarding safety for synovial
structures in the perfused area. The objective of this study was to determine whether
tiludronate concentrations in synovial structures after IVRLP with low dose (0.5 mg,
LDT) or high...
Full Text:
Information and
Declarations can be found on
page 12
DOI 10.7717/peerj.889
Copyright
2015 Hunter et al
Selecting an appropriate and efficient sampling strategy in biological surveys is a major concern in ecological research, particularly when the population abundance and individual traits of the sampled population are highly structured over space. Multi-stage sampling designs typically present sampling sites as primary units. However, to collect trait data, such...
Despite knowledge that concerted evolution of high-copy loci is often imperfect,
studies that investigate the extent of intragenomic polymorphisms and comparisons
across a large number of species are rarely made. We present a bioinformatic pipeline
for characterizing polymorphisms within an individual among copies of a high-copy
locus. Results are presented...
Full Text:
loci: A genus-wide study of nuclear ribosomal
DNA in Asclepias (Apocynaceae). PeerJ, 3, e718. doi
Meniscal tears are a common cause of stifle lameness in dogs. Use of autologous
synoviocytes from the affected stifle is an attractive cell source for tissue engineering
replacement fibrocartilage. However, the diseased state of these cells may impede
in vitro fibrocartilage formation. Synoviocytes from 12 osteoarthritic (“oaTSB”) and
6 normal...
Full Text:
joints
cultured as tensioned bioscaffolds for meniscal tissue engineering in dogs. PeerJ,
2, e581. doi
Consumer-grade GPS units are a staple of modern field ecology, but the relatively
large error radii reported by manufacturers (up to 10 m) ostensibly precludes their
utility in measuring fine-scale movement of small animals such as insects. Here
we demonstrate that for data collected at fine spatio-temporal scales, these devices...
Full Text:
-scale animal movement patterns.
PeerJ, 3, e1205. doi:10.7717/peerj.1205
10.7717/peerj.1205
PeerJ
Salmon and other anadromous fish are consumed by vertebrates with distinct
life history strategies to capitalize on this ephemeral pulse of resource availability.
Depending on the timing of salmon arrival, this resource may be in surplus to
the needs of vertebrate consumers if, for instance, their populations are limited
by...
Full Text:
vertebrate consumers: implications for conservation. PeerJ, 3, e1157.
doi:10.7717/peerj.1157
10.7717/peerj
Biodiversity information is made available through numerous databases that each have their own data models, web services, and data types. Combining data across databases leads to new insights, but is not easy because each database uses its own system of identifiers. In the absence of stable and interoperable identifiers, databases...
Cervical cancer is the fourth most common cancer in women worldwide with human papillomavirus (HPV) being the main cause the disease. Chromosomal amplifications have been identified as a source of upregulation for cervical cancer driver genes but cannot fully explain increased expression of immune genes in invasive carcinoma. Insight into...
Caribbean coral reefs have deteriorated substantially over the past 30 years, which
is broadly attributable to the effects of global climate change. In the same time,
Indo-Pacific reefs maintain higher coral cover and typically recover rapidly after
disturbances. This difference in reef resilience is largely due to much higher
coral...
Full Text:
of responses to settlement cues in reef-building corals. PeerJ, 2,
e333. doi:10.7717/peerj.333
The seed oil of meadowfoam, a new crop in the Limnanthaceae family, is highly enriched in very long chain fatty acids that are desaturated at the Δ5 position. The unusual oil is desirable for cosmetics and innovative industrial applications and the seed meal remaining after oil extraction contains glucolimnanthin, a...
Full Text:
analysis of developing embryos and a new genetic map of meadowfoam. PeerJ,
3, e915. doi:10.7717/peerj.915
Anti-predator behaviors like vigilance or hiding come at the expense of other fitness increasing behaviors such as foraging. To compensate for this trade-off, prey assess predation risk and modify the frequency of anti-predator behaviors according to the likelihood of the threat. In this study, we tested the ability of house...
Introduction. Age is the primary risk factor for major human chronic diseases, including cardiovascular disorders, cancer, type 2 diabetes, and neurodegenerative diseases. Chronic, low-grade, systemic inflammation is associated with aging and the progression of immunosenescence. Immunosenescence may play an important role in the development of age-related chronic disease and the...
Full Text:
/peerj.1854
Copyright
2016 Conley et al.
Distributed under
Creative Commons CC-BY 4.0
OPEN ACCESS
Background. Ampelisca eschrichtii Krøyer, 1842 of the Sakhalin Shelf of the Okhotsk Sea, Far Eastern Russia, comprise the highest known biomass concentration of any amphipod population in the world and are a critically important prey source for western gray whales. Growth and reproduction in this population has not been apparent...
On March 31, 2016 the Oregon State University Postdoctoral Association and the Oregon State University Libraries hosted an open access panel moderated by Pedro Molina-Sanchez. Speakers included Michaela Willi Hooper, Scholarly Communication Librarian at OSU Libraries; Rachael Kuintzle, PhD student in the OSU College of Science; Marit Bovbjerg, Faculty in...
As the options for open access publishing increase, scientists and students are a bit befuddled by the choices and the costs. Librarians are being asked difficult questions: Is this an okay journal to publish in? Is the editorial board reputable? How much is this going to cost? Is it worth...
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discipline.
PeerJ has an author membership model where you pay a fee and can publish one to unlimited
Kombucha is a fermented sweet tea beverage of Asian origin which has become popular in the West due to its distinct flavor and possible health benefits. Kombucha is fermented by inoculating sweet tea with yeast and bacteria until a pellicle, referred to as a SCOBY (symbiotic culture of bacteria and...
On March 31, 2016 the Oregon State University Postdoctoral Association and the Oregon State University Libraries hosted an open access panel moderated by Pedro Molina-Sanchez. Speakers included Michaela Willi Hooper, Scholarly Communication Librarian at OSU Libraries; Rachael Kuintzle, PhD student in the OSU College of Science; Marit Bovbjerg, Faculty in...
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environment. Some journals, like PeerJ, cover these costs with
institutional support. But others charge a
As the options for open access publishing increase, scientists and students are a bit befuddled by the choices and the costs. Librarians are being asked difficult questions: Is this an okay journal to publish in? Is the editorial board reputable? How much is this going to cost? Is it worth...
Full Text:
discounts to authors if their institutions have a membership. PeerJ has an author membership model where
Sand dunes provide coastal communities critical protection from flooding and erosion, as well as a habitat for a range of species- some threatened or endangered. As such, it is of importance to develop a quantitative understanding of the processes through which these systems evolve at a variety of temporal and...
The aim of the study is to understand how a child’s responsibility of care for a family pet affects the attachment and relationship between the child and dog. Attachment has been defined as a bond between two individuals that promotes both proximity-seeking and independent activity (Udell and Brubaker, 2016). Responsibility...
This article describes the design and development of an interoperable application that supports green open access with long-term sustainability and improved user experience of article deposit. The lack of library resources and the unfriendly repository user interface are two significant barriers that hinder green open access. Tasked to implement the...
This poster describes the development and implementation of a new course in data information literacy for graduate students. Curricular materials were drawn from the New England Collaborative Data Management Curriculum (NECDMC), the DataONE Education Modules, and the MANTRA online course materials. The pedagogical approach for the course combined outcomes-centered course...
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(included
in
the
PeerJ
article
Week
7
Date:
Tuesday,
18
February,
2014
Pacific razor clams (Siliqua patula) are narrow oblong bivalves that can be found in sandy habitats along the western coast of the United States, from Alaska (Aleutian Islands) to southern California (Pismo Beach). In Washington state, the razor clam fishery has been documented to be an important contributor to the...
Investigations of 16S rRNA gene sequences hallmark modern microbiology. These sequences provide culture-independent insight into the abundance and distribution of microbiota and serve as a principle resource through which microbial community diversity is measured. Consequently, researchers rely on 16S gene sequences to test hypotheses rooted in ecology, evolution, and disease....
Stony corals are the ecosystem engineers of the vital, dynamic, and complex marine ecosystem known as coral reefs. Globally, coral reefs are undergoing degradation from multiple anthropogenic stressors. Coral reef organism holobionts, or the host along with its microbial components, are key to reef ecosystem success and functioning. Marine microbes...
By broad consensus, Open Data presents great value. However, beyond that simple statement, there are a number of complex, and sometimes contentious, issues that the science community must address. In this review, we examine the current state of the core issues of Open Data with the unique perspective and use...
As coral reefs continue to experience decline from human-related stressors, the countless species that depend upon them for food and shelter are likely to follow, constituting a loss of one of the most biodiverse ecosystems on the planet. Though laboratory studies of corals remain difficult, promising model organisms may hold...
This poster describes the development and implementation of a new course in data information literacy for graduate students. Curricular materials were drawn from the New England Collaborative Data Management Curriculum (NECDMC), the DataONE Education Modules, and the MANTRA online course materials. The pedagogical approach for the course combined outcomes-centered course...
Full Text:
make
it
easier
to
(re)use
your
data.
PeerJ
PrePrints
1:e7v2
http
These slides were presented at a 1.5 day workshop on research data management and curation for the Northwest Five Consortium (NW5C). The NW5C is composed of Willamette University, Whitman College, University of Puget Sound, Reed College, and Lewis and Clark College. The mission of the NW5C is to enhance the...
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advantage. PeerJ 1, e175 (2013)
Sears, J.R. Data Sharing Effect on Article Citation Rate in Paleoceanography
Biodiversity loss is of global concern, and is due in part to deforestation and high consumer demand for wood and wood products. The neotropical tree species Cedrela odorata (“Spanish cedar” or “cedro”) is economically valuable for its wood and faces threats of overexploitation. Due to strong similarities in wood features...
On coral reefs, disturbances rarely occur in isolation. Global stressors such as increasing seawater temperature often coincide with local stressors like nutrient pollution. In the face of increasing anthropogenic stress, corals can function as environmental sentinels, although little is known about how multiple stressors interact to disrupt their associated bacterial...
Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our...
Our latest edition of the OWRI Technical Newsletter contains research updates and a comprehensive list of publications summarizing research conducted by faculty of the Oregon Wine Research Institute at Oregon State University. Dr. R. Paul Schreiner, USDA-ARS Research Plant Physiologist, opens the newsletter with a research update on Pinot noir...
Native bees are critically important organisms that support biodiversity and crop production via their pollination services. Wildfires in temperate conifer forests can increase bee abundance and flowering plant density due to increased light exposure, but little information is available regarding how wildfire severity influences provisioning to bee offspring, which is...
Pollination is an essential ecosystem service that sustains functioning ecosystems and aids in food production. In response to recent, widespread declines of managed and native bee populations, many land managers have shown interest in developing conservation and restoration plans for enhancing native bee habitat. However, there is a lack of...
A major goal of the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) has been to understand the impacts of climate change and variability on the coastal ecosystems of the inner shelf of the California Current Large Marine System in particular, and other marine and even nonmarine systems more generally....
Root-knot nematodes (Meloidogyne spp.) are one of the most important global plant pathogens. Recent innovations in molecular techniques have allowed increased study of this important pest, including the ability to investigate associated microbiomes. This study used 16S rDNA metagenomic sequencing to characterize the microbiome of Meloidogyne hapla, the northern root-knot...
Phytophthora infestans, the causal agent of late blight disease, has been reported in North America since the mid-nineteenth century. In the United States the lack of or very limited sexual reproduction has resulted in largely clonal populations of P. infestans. In 2010 and 2011, but not in 2012 or 2013,...
Wind power forecasting provides valuable insights for demand response, energy market operation, and plant control optimization. Probabilistic approaches—which capture uncertainty in these complex systems by representing predictions as probability distributions—represent a growing area of research in wind energy science. However, their applications for wind-based hybrid systems, particularly those focused on...
Coral reef ecosystems continue to be significantly altered by disease epizootics, but why some host populations remain resistant while others succumb to outbreaks remains unknown. Research across diverse animal and plant host systems has revealed that disease severity is strongly influenced by host genetics and by environmental influences on both...
Spotted wing drosophila, Drosophila suzukii, is a recently introduced, invasive pest in Oregon. It oviposits in near-mature and mature fruit, and thus is an important concern for the small fruit industry. A crop consultant observed that mature raspberry fruit with D. suzukii larvae do not show symptoms of molds as...
Grapevine Trunk Diseases (GTDs) are caused by a group of fungal pathogens that attack the xylem tissue of mature grapevines worldwide. In the past 30 years, their incidence has increased, both in emerging grape-producing regions, as well as those with an extended history of viticulture. In the same time span,...
Predators must consume enough prey to support costly events, such as reproduction. Meeting high energetic requirements is particularly challenging for migrating baleen whales as their feeding seasons are typically restricted to a limited temporal window and marine prey are notoriously patchy. We assessed the energetic value of the six most...
Coral reefs have become vulnerable to climate change, with mass bleaching events, the loss of symbiotic algae (Symbiodiniaceae), increasing in both frequency and severity. As climate change continues to threaten the persistence and existence of coral reefs around the world, the biggest question posed for coral reefs is “can they...
Understanding prey quality and prey selection by predators is critical for management efforts aimed at identification and protection of essential habitats and prey. Marine predators must make daily foraging choices in a heterogenous and dynamic environment in order to meet the high energetic demands of migration, reproduction and foraging. With...
The Endangered Species Act (ESA) is one of the strongest pieces of legislation enacted for the protection of imperiled species in the United States but has often spurred controversy among resource users for its emphasis on species protection and recovery above all other resource uses. In recent years, the Section...
The gut microbiome of all mammals is composed of a diverse commune of microorganisms including bacteria, fungi, archaea, protozoa and viruses 1. Studies have shown a symbiotic relationship between the gut microbiome and host physiology, with there being implications in health and disease progression 2. In captive animals, there has...
Agricultural and companion animals are integral to our way of life as they provide us with nourishment, financial resources, transportation, and companionship. However, pets, managed animals in the agricultural industry, as well as wild populations of food animals are all subject to health and mortality risks. The gut microbiome is...
In biological systems, antioxidants are bioactive compounds that protect against oxidation of lipids, proteins, and DNA. Natural antioxidant peptides are often purified and isolated from proteins as a less toxic alternative to synthetic peptides, but the mechanisms behind their activity are not well understood. The purpose of this study is...
In order to understand the ability of Detroit Reservoir’s recurring cyanobacterial bloom to produce toxins, and determine the genetic similarity of the bloom from year to year, environmental samples were taken from the Detroit Reservoir bloom biomass in the summers of 2017 and 2018. DNA from these samples was sequenced,...
The order Cornales (dogwoods) is the earliest diverging lineage within the most diverse group of flowering plants, the asterids (>80,000 species). Although molecular phylogenetics have significantly improved our understanding of cornalean systematics, early phylogenetic relationships remain uncertain due to an initial rapid radiation. The fossil record of Cornales is extensive...
At a time when the biodiversity on Earth is being rapidly lost, new technologies and methods in genomic analysis are fortunately allowing scientists to catalog and explore the diversity that remains more efficiently and precisely. The studies in this dissertation investigate genomic diversity within the milkweed genus, Asclepias, at multiple...
PURPOSE – The purpose of this article is to provide a vision for how academic libraries can assume a more central role in a future where Open Access publishing has become the predominant model for disseminating scholarly research articles.
DESIGN/METHODOLOGY/APPROACH – The authors analyze existing trends related to Open Access...
Although it is the first drug approved for usage to treat amyotrophic lateral sclerosis (ALS), riluzole’s mechanism of action is unknown and its therapeutic quality is hampered by its relatively short window of effectiveness. P2X7 is a purine receptor found in astrocytes and other cells, which increases calcium concentrations within...
The Upper Klamath Basin is an ecologically significant watershed that supports millions of migratory waterbirds along the Pacific Flyway in addition to an agricultural economy and a tribal fishery. This literature review and annotated bibliography is the basis for a capstone project to address the history, evolution, impacts, and responses...
With mechanization, the logging industry has experienced a decreasing trend in the total number of workplace accidents, especially as new technology is making harvesting safer. However, there are areas within harvest units such as extremely steep slopes or rocky outcrops that are inaccessible to machines and are required to be...
Corals provide a diversity of ecosystem services, are among the most biologically diverse ecosystems on Earth, and directly support ~500 million people globally; however, corals are increasingly experiencing significant threats and are undergoing severe bleaching events as the result of the warming climate. Using a two-year data set surrounding a...
Coral reefs are diverse ecosystems and serve many purposes including preventing erosion on coastlines and acting as a source of food, income, and culture. Acropora cervicornis, a staghorn coral, has faced a significant 80-89% decline in the Caribbean, attributed to a poorly-characterized epizootic, White Band Disease (WBD). Previous studies showed...
Seagrasses and coral reefs play important roles in nutrient cycling, coastal protection, and maintaining marine biodiversity. However, these coastal marine organisms are declining globally due to anthropogenic stressors, such as rising ocean temperatures, ocean acidification, and eutrophication. These organisms live in close association with their microbiomes, which can be beneficial...
Cnidarians and their symbiotic dinoflagellates form a productive mutualism that shapes marine environments. In this symbiosis, dinoflagellate species from the family Symbiodiniacea reside within cnidarian host gastrodermal cells and provide the host with photosynthetically fixed carbon in exchange for host metabolites. This nutritional exchange allows both partners to thrive in...
One fundamental concern in conservation biology is species abundance. For many taxa, however, these data are costly to obtain via direct observation and thus limited in geographic or temporal scope. Very high-resolution satellite imagery provides a means to address these limitations and provide remotely-sensed counts of large, colonial species. We...
The fungus Nothophaeocryptopus gaeumannii is the causative agent of Swiss needle cast (SNC), a foliar disease of Douglas-fir. Disease is characterized by premature loss of foliage and reduced growth resulting from the inhibition of photosynthesis due to the occlusion of stomata by the ascocarps of N. gaeumannii. Although the disease...
Biological invasions have been identified as one of the prominent drivers of global environmental change. In particular, invasive predators typically have substantial negative effects on populations of native prey, even driving species to extinction in extreme cases. However, beyond direct predatory effects, little is understood regarding the specific mechanisms by...
Spotted wing drosophila, Drosophila suzukii, is a devastating invasive pest of small and stone fruits in the Americas and Europe. To better understand the population dynamics of D. suzukii, we reviewed recent work on juvenile development, adult reproduction, and seasonal variation in life history parameters including the abiotic/biotic factors that...
Spotted wing drosophila, Drosophila suzukii, is a devastating invasive pest of small and stone fruits in the Americas and Europe. To better understand the population dynamics of D. suzukii, we reviewed recent work on juvenile development, adult reproduction, and seasonal variation in life history parameters including the abiotic/biotic factors that...
Despite nutrient-depleted conditions, coral reef waters harbor abundant and diverse microbes; as major agents of microbial mortality, viruses are likely to influence microbial processes in these ecosystems. However, little is known about marine viruses in these rapidly changing ecosystems. Herewe examined spatial and short-term temporal variability in marine viral abundance...
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host
phenotype. Shotgun metagenomic DNA sequencing is a relatively new and powerful
environmental sequencing approach that provides insight into community biodiversity and
function. But, the analysis of metagenomic sequences is complicated...
Pseudotsuga menziesii var. menziesii (coast Douglas-fir) is a tree of ecological, economic, and cultural value in its native North American Pacific Northwest (PNW) distribution. P. menziesii is host to a variety of well-documented endophytic foliar microorganisms, including the fungus Nothophaeocryptopus gaeumannii, the causal agent of Swiss needle cast (SNC), and...
Biogeochemical mechanisms employed by key organisms, or symbiotic associations of organisms, transform the function and structure of their environment through processes recognized as ecosystem engineering. This dissertation seeks to investigate organism-ecosystem interactions that serve globally significant ecological functions in marine systems and impact how systems respond to environmental change. Using...
Two ecologically important lamprey species found in the endorheic Goose Lake Basin face conservation threats; however, relatively little is known about their habitat needs or spatial distribution. Lamprey and their habitat are often found to be patchy; to evaluate these relationships for the lamprey in this basin, I utilized a...
The endangered Hawaiian common gallinule (Gallinula chloropus sandvicensis) is an endemic Hawaiian waterbird that occurs only on O‘ahu and Kaua‘i. Hanalei National Wildlife Refuge (NWR) supports the largest population of Hawaiian gallinule on either island and is also one of the highest producers of commercially grown taro in the state....
Treatment providers seek low-cost, high-impact means of engaging clients in care with the aim to enhance treatment delivery and outcomes. With improvements to mobile technology making cell phone accessibility and usage rates high across all socio-economic levels, text messaging is becoming more frequently utilized as a means of promoting provider-client...
Meadowfoam (Limnanthes alba) is an oilseed crop with unique chemical characteristics. The ability to identify physiological maturity (PM) and harvest maturity HM of the crop would permit timely harvest of high quality seeds. However, changes of oil contents, fatty acid profile and glucosinolate contents, as well as seed quality during...
In host-associated microbiomes, the mechanisms that regulate community composition or the principles that govern dynamics remain far from clear. However, understanding how the structure of microbial communities shift as the system moves away from a healthy state is critical to assessing disease progression and to formulate any potential mitigation strategy....
Systemic hypertension, a persistent elevation in systemic arterial blood pressure (BP), is a well-recognized disorder in cats. Failing to diagnose it accurately could lead to organ damage or unnecessary lifelong therapy. Doppler ultrasonic flow detectors are commonly used for indirect BP measurements in cats. However, whether the audible static from...
North American bird populations have declined throughout the past half century. The majority of studies quantifying these declines have focused on spring and summer breeding birds; not the season of scarcity, winter. We re-surveyed 7 large study plots in Douglas fir forests initially surveyed in winter during the late 1960s...
