This article gives insights on the complex balance between coalitions structure,
resource state or dynamics and agents’ heterogeneity to avoid bio-economic
collapses. A model bringing together coalition games and a viability approach
is proposed to focus on the compatibility between bio-economic constraints and
an exploited common stock dynamics. It is...
This paper deals with the sustainable management of a renewable resource
based on individual and transferable quotas (ITQs) when agents differ in terms of
harvesting costs or catchability. In a dynamic bio-economic model, we determine
the conditions under which the manager of an ITQ system can achieve sustainability
objectives which...
The coastal fishery in French Guyana is a challenging case study for the implementation of the ecosystem based fishery management. Although the current situation of this small scale fishery could be considered as satisfactory, the viability of the fishery can be questioned. Indeed according to demographic scenarios, the growth of...
Every wood anatomist knows that the wood near the center of a tree (juvenile wood) differs from the wood laid down at some distance from the pith (mature wood), and that the wood produced during the spring (earlywood) differs from the wood produced during the summer (latewood). There is a...
Recent work in the domain of fisheries ecology has shown that major
changes occur in fish communities exploited by commercial fisheries.
Selective fishing pressure on the more highly valued components of fish
communities is amongst the key factors proposed to explain these changes.
Under de facto open access conditions, it...
The cohesion-tension theory of water transport states that hydrogen bonds hold water molecules together and that they are pulled through the xylem under tension. This tension could cause transport failure in at least two ways: collapse of the conduit walls (implosion), or rupture of the water column through air-seeding. The...
The air‐seeding hypothesis predicts that xylem embolism resistance is linked directly to bordered pit functioning. We tested this prediction in trunks, roots, and branches at different vertical and radial locations in young and old trees of Pseudotsuga menziesii. Dimensions of bordered pits were measured from light and scanning electron micrographs,...
We determined the axial and radial xylem tension gradients in trunks of young Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) trees. Axial specific conductivity (ks-a) and sap flux density (Js) were measured at four consecutive depths within the sapwood at a stem height of 1 m. By definition, at a given position...
Our goals were to quantify how non-embolism-inducing pressure gradients influence trunk sapwood specific conductivity (ks) and to compare the impacts of constant and varying pressure gradients on ks with KCl and H2O as the perfusion solutions. We studied six woody species (three conifers and three angiosperms) which varied in pit...
The Willamette Valley (WV) race of ponderosa pine (Pinus ponderosa) is being widely planted for timber in the Willamette Valley, western Oregon, because it grows in habitats that are either too wet or too dry for Douglas-fir (Pseudotsuga menziesii). Compared to the eastern Cascade Mountains (CM), the WV has 3...
• Premise of the Study: Tropical liana abundance has been increasing over the past 40 yr, which has been associated with reduced
rainfall. The proposed mechanism allowing lianas to thrive in dry conditions is deeper root systems than co-occurring trees,
although we know very little about the fundamental hydraulic physiology...
Despite renewed interest in the nature of limitations on maximum tree height, the mechanisms governing ultimate and species-specific height limits are not yet understood, but likely involve water transport dynamics. Tall trees experience increased risk of xylem embolism from air-seeding because tension in their water column increases with height due...
Co-occurring species often have different strategies for tolerating daily cycles of water stress. One underlying parameter that can link together the suite of traits that enables a given strategy is wood density. Here we compare hydraulic traits of two pioneer species from a tropical forest in Panama that differ in...
Plant hydraulic architecture (PHA) has been linked to water transport sufficiency, photosynthetic rates, growth form and attendant carbon allocation. Despite its influence on traits central to conferring an overall competitive advantage in a given environment, few studies have examined whether key aspects of PHA are indicative of successional stage, especially...
The volume and complexity of their vascular systems make the dynamics of long‐distance water transport in large trees difficult to study. We used heat and deuterated water (D₂O) as tracers to characterize whole‐tree water transport and storage properties in individual trees belonging to the coniferous species Pseudotsuga menziesii (Mirb.) Franco...
Model–data comparisons of plant physiological processes provide an understanding of mechanisms underlying vegetation responses to climate. We simulated the physiology of a pi~non pine–juniper woodland (Pinus edulis–Juniperus monosperma) that experienced mortality during a 5 yr precipitation-reduction experiment, allowing a framework with which to examine our knowledge of drought-induced tree mortality....
Rising atmospheric [CO₂], cₐ, is expected to affect stomatal regulation of leaf gas-exchange of woody plants, thus influencing energy fluxes as well as carbon (C), water, and nutrient cycling of forests. Researchers have proposed various strategies for stomatal regulation of leaf gas-exchange that include maintaining a constant leaf internal [CO₂],...
Final program details of Visible Possibilities: The Economics of Sustainable Fisheries, Aquaculture and Seafood Trade, the 16th Biennial Conference of the International Institute of Fisheries Economics & Trade, held July 16-20, 2012 in the Hyatt Regency Kilimanjaro Hotel, Dar es Salaam Tanzania
Proceedings of Visible Possibilities: The Economics of Sustainable Fisheries, Aquaculture and Seafood Trade, the 16th Biennial Conference of the International Institute of Fisheries Economics & Trade, held July 16-20, 2012 in Dar es Salaam, Tanzania.
Global interest in reducing carbon emissions by use of alternative energy sources makes nuclear energy production and the impacts of the nuclear energy cycle relevant. Studying the aqueous speciation of tetravalent metals commonly used for nuclear energy (uranium, thorium, plutonium) can inform us of general metal properties and their behavior...
The purpose of my thesis is to recognize the social injustice that existed in France 20 years ago and continues to result in social dysfunction today. I have used the film La Haine (dir. Mathieu Kassovitz, 1995) to examine past events in France’s history and have compared them to more...
La pêcherie martiniquaise se trouve aujourd'hui dans une situation paradoxale : d'un côte elle se veut résolument moderne de par 1) les embarcations et des outils de production de plus en plus sophistiqués (coques rapides sur-motorisées, GPS, etc.) que les pêcheurs acquièrent a grands frais; de l'autre, elle reste séculaire...
Streptococcus gordonii (S. gordonii) is being developed as a Gram-positive
expression vector for the expression of heterologous proteins. This bacterial
expression system takes advantage of the natural pathway of protein export and
anchoring on the surface of the bacterium. The expression of heterologous proteins
relies on the homologous recombination of...
My thesis in Environmental Arts and Humanities concerned the idea of animal language, as well as other posthuman ideas around animality and indistinction. I also explored virtual space as it relates to human identity, our notions of reality and perception, and the way contemporary digital artists approach animal subjectivity in...
Wood composites are an important renewable structural material which can be a net carbon sink when used in combination with sustainable forest management practices and high rates of log utilization. Adhesive bondlines are an essential part of composites, and for wood composites, they determine the moisture durability and mechanical performance...
The paper presents a detailed approach to modeling supply and demand of the Asian fish sector. It discusses the salient features of the fish sector in Asian countries that need to be incorporated in a comprehensive model of fish supply and demand, as well as the usefulness of supply and...
This research investigated the longevity of functional connections between leaf traces and stem xylem in 16 species of conifers to better understand the spatial use of sapwood for water transport. The first question was which ring(s) stained when a vacuum was applied to the distal end of the cut surface...
Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our...
In this comprehensive thesis, we present a series of experiments and findings that highlight the
critical importance of TDC Voltage Sensors in the hardware security domain. Our research begins
by introducing a novel self-calibrating module, demonstrating its efficiency through preliminary
calibration tests. We then delve into the Peak-to-Peak tests, which...
During the eighteenth century, diagrams increasingly became an important aspect of scientific inquiry. Diagrams employed simplification as a strategy for representing complex information, played a role in standardizing scientific language, and served as instruments of reason to think through and communicate problems and findings in mathematics, physics, chemistry, astronomy, natural...
An upscaled elliptic-parabolic system of partial differential equations
describing the multiscale flow of a single-phase incompressible fluid and
transport of a dissolved chemical by advection and diffusion through a heterogeneous
porous medium is developed without the usual assumptions of scale
separation. After a review of homogenization results for the traditional...
The composition of global agricultural trade is shifting from primary commodities to processed foods in terms of value and quantity. It is important to understand the linkages between agriculture and food processing to identify the sources of the structural change in agricultural trade. The question addressed by this research is...
Variation in cheese quality due to geographic location is important to cheese producers, consumers, and retailers on a global level. Understanding the impacts of geographic location of cheese plants may be useful to businesses for marketing, cost reduction, and quality improvement. Many aspects of variation due to geography have been...
Bruno Latour’s Facing Gaia provokes us to embrace our Earthboundedness to approach the problematic political ecologies of the Anthropocene. Latour’s call for the Earthbound is to re-trace networks of society, institutions, and meaning and to challenge, as enemy, those that would continue to behave as if we lived on more...
This compilation of theses and dissertations (a part of the OSU Bibliographic Series) for the period 1970-1977 reflects this university's emphasis on research and graduate study. It may be viewed as an indicator of the contributions made to the state of Oregon through graduate study and research at Oregon State...
The management and use of the palm Astrocaryum chambira (commonly known in Peru as “chambira”) for handicrafts is a traditional activity for Indigenous women in the Amazon region. Some governmental and non-governmental initiatives have tried to formalize the production of chambira for handicrafts for commercial purposes, to promote women's empowerment...
Wheat stripe rust (WSR), also called yellow rust of wheat (Tricitum spp.), causal agent Puccinia striiformis f.sp. tritici (Pst), is a foliar disease of major economic importance on wheat, especially grown in temperate locations. WSR causes major losses of wheat yield, estimated at nearly $ 1 billion per year, and...
Fully efficient systolic arrays for the solution of Toeplitz
matrices using Schur algorithm [1] have been obtained. By applying
clustering mapping method [2], the complexity of the algorithm is
0(n) and it requires n/2 processing elements as opposed to n
processing elements developed elsewhere [1].
The motivation of this thesis...
• A technique for measuring in vitro respiration was investigated to understand why rates were higher than those reported in vivo and to elucidate trends within mature Pseudotsuga menziesii (Douglas‐fir) trees.
• Extracted increment cores were divided into 3–4 radial depths and a gas chromatograph was used to compare respiration...
Spalting fungi show strong potential as natural colorants on a variety of materials, specifically textiles and wood. Four species of spalting fungi are currently utilized in this manner: Scytalidium cuboideum, which produces a red pigment called draconin red, Scytalidium ganodermophthorum, that produces an unknown yellow pigment, and Chlorociboria aeruginosa and...
Previous work introduced the GenderMag method, a software inspection method used to help software creators identify features within their software that are not gender-inclusive. Inclusiveness of software (gender or otherwise) matters because supporting diversity matters—it is well-known that the more diverse a group of problem-solvers, the higher the quality of...
Carbon Nanotubes are a unique family of nanostructures that have shown remarkable promise for mechanical, electrical, and optical applications. Fundamentally similar to the earlier discovered Buckminsterfullerene (C₆₀), carbon nanotubes are hollow cylinders formed from a single sheet of carbon atoms. The research presented in this dissertation investigates several carbon nanotube...
Hyperspectral images consist of intensity measurements associated with a large number of EM wavelengths per pixel. When a pixel contains a single material, the measurements of the pixel match the spectral signature of the material. When multiple materials are present in a single pixel, spectral mixing occurs, and signatures of...
The effect of cosputtered catalyst on growth and alignment of carbon nanotubes (CNTs) grown by plasma enhanced chemical vapor deposition (PECVD) was investigated. Aligned CNTs were observed using a cosputtered catalytic metal deposited directly on boro-aluminosilicate glass. Catalytic metal alloys were sputtered directly onto the substrate using magnetron sputtering. Deposition...
The fruitless (fru) gene in Drosophila melanogaster is a multifunctional gene having sex-specific functions in the regulation of male sexual behavior and sex-nonspecific functions affecting adult viability and external morphology. While much attention has focused on fru's sex-specific roles, little is known about its sex-nonspecific functions. The embryonic central nervous...
As modern systems continue to increase in size and complexity, they pose significant safety and risk management challenges. System engineers and much of the government research efforts are focused on understanding the attributes and characteristics that emerge from the interactions of components and subsystems. As a result, the objective of...
Given the many significant roles that bacteria play in modern food manufacturing, it is crucial that we have a fundamental understanding of how bacterial communities assemble and behave in the food manufacturing environment. The focus of this dissertation was to investigate both the spatial and temporal distributions of microbial communities...
Force data for a flapping foil energy harvester with active leading edge motion operating in the low reduced frequency range is collected to determine how leading edge motion affects energy harvesting performance. The foil pivots about the midchord and operates in the low reduced frequency range of 0.06, 0.08, and...
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Animals aggregate and interact in nonuniform and nonrandom patterns, which lead to group level characteristics that have important evolutionary and ecological consequences. Network analysis provides a useful conceptual framework for linking animal interactions at all scales from dyads to communities, to populations and ecosystems. Despite exciting theoretical and applied advances...
We describe a series of novel computational models, CERENKOV (Computational Elucidation of the REgulatory NonKOding Variome) and its successors CERENKOV2, CERENKOV3, and Convolutional CERENKOV3, for discriminating regulatory single nucleotide polymorphisms (rSNPs) from non-regulatory SNPs within non-coding genetic loci. The CERENKOV models are designed for recognizing rSNPs in the context of...
In the second chapter, a foam-core meniscus coating process was developed for retrofitting 100 nm-scale sol-gel anti-reflective coatings onto in-field solar panels through the deposition, evaporation, and curing of wet films.Advantages of this technique include the means to control fluid flow relative to substrate motion and the ability to conform...
Robotic limbs have been shown to enable mobility in unstructured, real-world terrain; they allow robots to step around cluttered environments, scramble up hills, carry heavy loads, and even perform acrobatics. However, mechanical limbs cannot operate as a means for such dynamic locomotion if they are simply treated as general articulated...
Bildungsroman in Contemporary Black Women's Fiction is a study of Toni
Morrison's The Bluest Eye and Alice Walker's The Color Purple. Both of these writers
implement a newer version of the genre of Bildungsroman to reveal the complexities
involved in coming of age for a young woman of color. Both...
This study investigated variation in xylem anatomy, hydraulic properties, and the relationship between anatomy and properties within Douglas-fir trees at multiple scales. The hierarchical scales in the study included fertilization treatments (fertilized and unfertilized), trees within the treatments, and positions within the trees. Tracheid diameter, tracheid length, percent latewood, number...
This study investigated variation in xylem anatomy, hydraulic properties, and the relationship between anatomy and properties within Douglas-fir trees at multiple scales. The hierarchical scales in the study included fertilization treatments (fertilized and unfertilized), trees within the treatments, and positions within the trees. Tracheid diameter, tracheid length, percent latewood, number...
This thesis reports on computational research in two different areas. I first discuss the Min-protein system found within Escherichia coli. Following this I discuss an extended investigation into improving free energy functionals that are used within Classical Density Functional Theory in order to model water. Chapter 2 examines the dynamics...
Many database users are not familiar with formal query languages, the concept of schema, or the exact content of their database. Thus, it is challenging for these users to formulate their information needs over semi-structured and structured databases. To address this problem, researchers have proposed usable query interfaces over which...
Hop (Humulus lupulus L. var. lupulus) is a diploid, dioecious plant with an extensive history of cultivation and use in brewing, as a textile, and for its therapeutic properties. Hop is prized for its ability to produce a variety of aromatic and flavor compounds, as well as compounds with anti-microbial...
The Willamette Mission archeological project
consists of a broad program of cultural research in the
fields of archeology, history, and architecture. The
study focuses on the first Methodist mission in the
Pacific Northwest. Archeological excavations were
conducted in 1980 to locate the site of the mission, to
assess the site's...
The Willamette Mission archeological project
consists of a broad program of cultural research in the
fields of archeology, history, and architecture. The
study focuses on the first Methodist mission in the
Pacific Northwest. Archeological excavations were
conducted in 1980 to locate the site of the mission, to
assess the site's...
Declarative visual programming languages (VPLs), including spreadsheets, make up a large portion of both research and commercial VPLs. Spreadsheets in particular enjoy a wide audience, including end users. Unfortunately, spreadsheets and most other declarative VPLs still suffer from some of the problems that have been solved in other languages, such...
Cytoplasmic dynein is an ATP-dependent, microtubule-based molecular motor involved in the positioning and trafficking of cellular cargo. The cargo binding sub-domain of dynein contains the natively disordered intermediate chain (IC) and the homodimeric light chains (Tctex1, LC8 and LC7). The structure and stoichiometry of this complex, how the light chains...
Ph.D. candidate Qi Wei's thesis consists of two projects: Chemotherapy Project: a study based on the research paper "Predicting chemotherapy response of various cancer types using a variational auto-encoder approach" submitted to the bioRxiv preprint archive and accepted by the BMC bioinformatics; and Wound Monitor Project: implementing and assessing analytics...
Grasslands in the Pacific Northwest are characterized by seasonally wet, acidic soils that mainly support cool season grasses and a limited number of legume species. A major limitation to efficient animal production in grass-dominant pastures is the decline in the herbage growth rate and nutritional quality of forage from late...
The European hazelnut (Corylus avellana L.) is a tree nut crop that is important in Oregon, which produces 99% of the United States’ hazelnuts but only 5% of the world’s supply. In order to maintain this market share, farmers in Oregon need cultivars that produce high quality nuts, mature early,...
Textiles (including basketry, cordage, woven, knotted, or plaited products) make up a considerable portion of the perishable archaeological record in dry caves of the northern Great Basin region, much of which is created from plants and plant fibers. The archaeological study of precontact textiles greatly informs our understanding of how...
This work is a compilation of problems that deal with multiscale analysis of transport phenomena in environmental systems. A common feature among the problems studied here is the presence of non-negligible microscale structure in various forms. Each problem is approached from the perspective that a macroscopic observable encodes aspects of...
It is possible to purchase, for as little as $10,000, a cluster of computers with the capability to rival the supercomputers of only a few years ago. Now, users that have little to no experience developing distributed applications or managing a cluster are in a position to do so. To...
This dissertation presents novel, field-activated smart material systems for the actuation and control of autonomous robots. Smart materials, a type of material whose properties can be changed with an external stimuli, represent a promising direction to expand upon existing robotic control and actuation methods, particularly in the sub-fields of soft...
Ecological domains seeking to understand the environment and the behavior of species have received little attention in machine learning (ML), despite the fact that environmental changes have a significant impact on humans as well as ecosystems. Some ecological problems can be formulated similarly to other common ML applications, but there...
Software systems are becoming an essential part of the lives of both individuals and organizations, and as a consequence, these systems are getting bigger and more complex. Because of this, the tasks of maintaining the quality in these complex software systems are becoming increasingly difficult. Furthermore, these systems are subject...
The Cascadia subduction zone has been characterized as a typical Chilean-type
subduction zone based on qualitative comparisons of plate age and convergence rate, with
simple forearc structure. However, the discovery of unusual structural styles of
deformation, variations in the morphology of the forearc, and its absence of seismic activity
suggest...
It is necessary to evaluate and compare the characteristics of
various methods of accessing data-files in order to utilize economically
both the hardware and the software (Space and Time) supported
by the digital on-line system. The purpose of this paper is to
describe and evaluate the structure and use of...
Iterative algorithms are simple yet efficient in solving large-scale optimization problems in practice. With a surge in the amount of data in past decades, these methods have become increasingly important in many application areas including matrix/tensor recovery, deep learning, data mining, and reinforcement learning. To optimize or improve iterative algorithms,...
Mathematical modeling plays a pivotal role in understanding the mechanism of radiation-induced cellular effects, and also in quantifying the radiation risk to the cell. However, there are still compelling challenges facing the conventional modeling in radiobiology, such as lacking a generalized theory structure of quantifying target effect and non-target effect...
The objective of this dissertation is to enhance the monitoring of forest ecosystems through the utilization of remotely sensed data to address the exigencies posed by the Anthropocene. On a global scale, rising temperatures and fluctuating precipitation patterns have strained forests and produced shifts in natural disturbance regimes. Additionally, the...