In order to address the energy needs of developing countries and remote communities, Oregon State University has proposed the Multi-Application Small Light Water Reactor (MASLWR) design. In order to achieve five years of operation without refueling, use of 8% enriched fuel is necessary.
This dissertation is focused on core design...
The Multi-Application Small Light Water Reactor (MASLWR) is a small natural circulation pressurized light water reactor design that was developed by Oregon State University (OSU) and Idaho National Engineering and Environmental Laboratory (INEEL) under the Nuclear Energy Research Initiative (NERI) program to address the growing demand for energy and electricity....
NCRP report No.160 states that medical exposure increased to nearly half of the total radiation exposure of the U.S. population from all sources in 2006 (NCRP 2009). Part of this increase in exposure is due to the rise in nuclear medicine procedures. With this observed growth in medical radionuclide usage,...
This study focuses on iodine-131 detected in milk samples from the Dairy Science Unit at Cal Poly, San Luis Obispo, California following events at the Fukushima Dai-ichi Nuclear Power Plant in March of 2011. The samples were collected as part of the Diablo Canyon Nuclear Power Plant (DCPP) Radiological Environmental...
The elimination of soluble boron creates several advantages for Small Modular Reactor (SMR) operation. Most of these advantages are realized through significant core simplification (removal of pipes, pumping, and purification systems), the removal of the corrosive effects of soluble boron, and from improved safety effects. However, removing soluble boron creates...
Programming parallel machines has been a difficult and unrewarding task. The short lifespan of parallel machines and their incompatibility have made it difficult to utilize them. Our goal here is to create an environment for parallel computing which allows users to take advantage of parallel computers without writing parallel programs....
Regression testing is an expensive software engineering activity intended to provide confidence that modifications to a software system have not introduced faults. Test case prioritization techniques help to reduce regression testing cost by ordering test cases in a way that better achieves testing objectives. In this thesis, we are interested...
Signs of climate change across the Pacific Northwest indicate changing patterns of timing and availability of stream flow. Declining summer low flows, decreasing snow pack, higher temperatures and an increasing fraction of mountain precipitation falling as rain, raise concerns about future reliability of stream flows. These changes will likely affect...
Detection technique that proposed utilizing electrochemically controlled, reversible ion extraction into polymeric membrane in an alternating galvanostatic/ potentiostatic mode was introduced. This method is studied in detail to comprehend the advantages of the novel sensor (pulstrode) compared to the potentiometric ion selective electrode (ISE), studies included possible applications and limitations....
A novel method for detecting the peptidase activity of clinically relevant peptidases was investigated using solid-contact electrochemical polyion sensors under chronopotentiometric control. Complete instrumental control over ion-extraction was accomplished by incorporating a lipophilic electrolyte into the ion-selective membrane; the sensors had no intrinsic ion-exchange capabilities. The sensors were used to...
Plant diseases often cause serious yield losses in agriculture. A pathogen’s invasiveness can be quantified by the basic reproductive number, R₀. Since pathogen transmission between host plants depends on the spatial separation between them, R₀ is strongly influenced by the spatial scale of the host distribution.We present a proof of...
Full Text:
A. Mikaberidze et al.
Alexey Mikaberidze, Christopher C
Plant diseases often cause serious yield losses in agriculture. A pathogen’s invasiveness can be quantified by the basic reproductive number, R₀. Since pathogen transmission between host plants depends on the spatial separation between them, R₀ is strongly influenced by the spatial scale of the host distribution.We present a proof of...
Full Text:
distribution
Alexey MIkAberIdze,1,3 chrIstopher c. Mundt,2 And sebAstIAn bonhoeffer1
1Institute of
Many D2d-symmetric 2,2',6,6'-tetrasubstituted biphenyls are
readily prepared via net oxidative dimerization of appropriate
1,3-disubstituted benzenes. Conversion of such proprochiral
compounds to useful C2-symmetric chiral biphenyls requires
formal replacement of two substituents on opposing aryl ring
units with alternate groups. This under exploited
desymmetrization tactic has been demonstrated for the
generation...
The improvement of the agricultural and wine-making qualities of the grapevine (Vitis vinifera) is hampered by adherence to traditional varieties, the recalcitrance of this plant to genetic modifications, and public resistance to genetically modified organism (GMO) technologies. To address these challenges, we developed an RNA virus-based vector for the introduction...
In previous work (Blakemore et al. Org. Lett. 2005, 7, 4721; Heterocycles 2006, 70, 609), successful elaborations of the lupine alkaloids (±)-α-isosparteine (dl-2) and (±)-β-isosparteine (dl-3) were realized from a common tetraoxobispidine precursor, 3,7-diallyl -2,4,6,8-tetraoxo-3,7-diazabicyclo[3.3.1]nonane (93). Herein, the tetraoxobispidine approach to lupine alkaloids was extended to a total synthesis of...
The well-known fact that tropical sea level can be usefully simulated by linear wind driven models recommends it as a realistic test problem for data assimilation schemes. Here we report on an assimilation of monthly data for the period 1975-1992 from 34 tropical Pacific tide gauges into such a model...
Global electromagnetic (EM) induction studies have been the focus of increasing attention during the past few years. A primary stimulus for this interest has been increased quality, coverage and variety of the newly available data sets especially from recent low-Earth-orbiting satellite missions. The combination of traditional ground-based data with satellite-borne...
At a time when the biodiversity on Earth is being rapidly lost, new technologies and methods in genomic analysis are fortunately allowing scientists to catalog and explore the diversity that remains more efficiently and precisely. The studies in this dissertation investigate genomic diversity within the milkweed genus, Asclepias, at multiple...
The development and some applications of holographic optical tweezers (HOT) are presented. Our HOT system uses a spatial light modulator (SLM) to control the location and properties of the optical trap. We have developed a method for optimizing the diffraction efficiency of a SLM that can be applied in situ...
Adjoint-derived weight windowing is a hybrid deterministic/Monte Carlo method to simulate radiation transport. In adjoint-derived weight windowing, a deterministic adjoint solution is used to create weight windows for a Monte Carlo simulation. The intent of this work is to identify factors that reduce the Figure of Merit (FOM) of Monte...
Detection of reactor antineutrinos for non-proliferation applications has been researched extensively across the globe and is considered as a potential technology to remotely monitor reactor operations without any intrusions to reactor components. Reactor antineutrino detection experiments have been conducted in the past and have proven successful in detecting the changes...
Animals aggregate and interact in nonuniform and nonrandom patterns, which lead to group level characteristics that have important evolutionary and ecological consequences. Network analysis provides a useful conceptual framework for linking animal interactions at all scales from dyads to communities, to populations and ecosystems. Despite exciting theoretical and applied advances...
With the strong shift toward network-centric cluster-computing workload management has become increasingly important in both industrial and academic environments. To fully harness the distributed computing resources of the 32 PC's in our department, I developed a workload monitoring system together with a few utilities for users to submit either sequential...
The purpose of this research is to investigate how stakeholders involved in collaborative watershed groups in Oregon work with each other to form ideas and take action. Most collaboration efforts include encouraging a high level of trust with a great value placed on relationships and partners, being open and flexible,...
This project was a proof of concept of the use of the RAVEN software, a tool developed for the Risk Informed Safety Margin Characterization (RISMC) approach, with RELAP5-3D. This novel approach combines older probabilistic and mechanistic approaches to look at how and why the complex systems of a nuclear power...
This dissertation addresses the problem of video labeling at both the frame and pixel levels using deep learning. For pixel-level video labeling, we have studied two problems: i) Spatiotemporal video segmentation and ii) Boundary detection and boundary flow estimation. For the problem of spatiotemporal video segmentation, we have developed recurrent...
The recent 2013 Oregon State Board of Agriculture report identified several ways to improve agricultural income in Oregon. Recommendations to improve water development are at the top of the report's list of objectives. In this study, I analyze the relationship between net cash farm income (NCFI) and a cross-sectional set...
Geographical datasets are large, complex, and can be difficult for users to navigate and derive meaning from. These datasets, as well as the unique insights derived from them, provide tremendous opportunity for social change -- many of the global challenges humankind is currently facing can benefit from analytics or visualization...
As the semiconductor industry works to integrate increasingly more "non-CMOS" devices onto CMOS ICs, compact model development has become an important step in the circuit/system verification tool flow. This research focuses on the two- and three-dimensional modeling of the physical phenomena that occur in nanoscale magnetic devices. This includes the...
Over time, Open Source Software (OSS) has become indispensable in the creation and upkeep of software products, serving as the fundamental building block for widely used solutions in our daily lives, including applications that enable communication, entertainment, and productivity. A sustainable OSS ecosystem is one that attracts and retains a...
The use of board games for teaching introductory computer science is a promising recent avenue of research. The goal is to introduce computing concepts through their use in the implementations of simple games, thereby keeping students engaged through their learning process. However, there is a gap between students' algorithmic descriptions...
Emergence of highly accurate Convolutional Neural Networks (CNNs) with the capability to process large datasets, has led to their popularity in many applications, including safety/security-sensitive (e.g. disease recognition, self-driving cars). Despite the high accuracy of convolutional neural networks, they have been found to be susceptible to adversarial noise added to...
A comprehensive tribal-level classification for the world's subfamilies of Hesperiidae, the skipper butterflies, is proposed for the first time. Phylogenetic relationships between tribes and subfamilies are inferred using DNA sequence data from three gene regions: 943 bp of cytochrome oxidase subunit I (COI) (in the mitochondrial genome), 739 bp of...
Wildtype sunflower typically produces 12-24% oleic acid (18:1) and 70-82%
linoleic acid (18:2). High-oleic sunflower, by contrast, produces up to 80-94% oleic
acid. The monounsaturated oleic acid has a greater oxidative stability than the
polyunsaturated linoleic acid, predominant in wildtype sunflower, and has greater
nutritional benefits than polyunsaturated and saturated...
Selenoprotein W (SeW) is a protein whose function is unknown, but potentially plays a vital role in calcium metabolism, as an indirect link has been established with white muscle disease (WMD). White muscle disease occurs in selenium deficient animals, and is characterized by the precipitation of calcium in muscle, leading...
Climate changes are growing environmental concerns which are much in the scientific government and public eye at present. The potential impact on aquatic resources and livelihood are immense. From local to global levels, fisheries and aquaculture play important roles for food supply, food security and income generation. Some 43.5 million...
Chemical synthesis of oligonucleotides is a widely used tool in the field of biochemistry.
Several methods for gene synthesis have been introduced in the growing area of genomics.
In this paper, a novel method of constructing dsDNA is proposed. Short (28-mer) oligo fragments
from a library were assembled through successive...
Full Text:
. doi: 10.1038/nmeth.2918 PMID: 24781323
3. Borodina TA, Lehrach H, Soldatov AV. Ligation-based
Ion-selective polymeric optical sensors – ion optodes – are a promising alternative to ion-selective electrodes and fluorescent dyes for analytical and biological applications, e.g. extra- and intracellular measurements. They are non-toxic, highly selective robust probes for ionic fluxes monitoring.
A large-scale fabrication of ion optodes using a solvent displacement method...
Top-performing approaches to embodied AI tasks like point-goal navigation often rely on training agents via reinforcement learning over tens of millions (or even billions) of experiential steps – learning neural agents that map directly from visual observations to actions. In this work, we question whether these extreme training durations are...
This thesis addresses the problem of temporal action segmentation in videos, where the goal is to label every video frame with the appropriate action class present. We focus on the domain of NFL football videos, where action classes represent common football play types. For action segmentation, we use a temporal...
This thesis describes an automated method to estimate tree trunk width in a commer-cial apple orchard. Trunk cross sectional area, which is an important consideration with regards to nutrient uptake, is a feature being integrated in a decision support system for precision Nitrogen management. The data used to generate the...
Antineutrino detectors could provide a valuable addition to current safeguards
regimes. Antineutrinos are an attractive emission to monitor due to their low
interaction cross-section that prevents them from being shielded and the dependence
of their spectrum on the power level and isotopic content of a reactor core. While
there are...
_____________________________________________________________________
Dean of the Graduate School
I understand that my dissertation will become part of the
Currently, a popular approach to image classification uses the deep Transformer architecture. In a Transformer, the attention mechanism enables the model to learn efficiently with fewer computational resources than the convolutional neural networks (CNNs). In this thesis, we study the sparse attention mechanism widely used in the Transformers developed specifically...
Molecular DNA markers have become widely used in all areas of genetic
research. The objectives of this thesis were to develop polymorphic markers in sunflower
and utilize the markers for genetic and candidate gene analyses. Amplified fragment
length polymorphism (AFLP) markers were used to estimate genetic similarities and
assess the...
The Open Modeling Environment (OME) is a tool developed to address some known shortcomings in ecological System Dynamics (SD) modeling research. OME provides a common set of methods for interacting directly with spatial information, reducing the need for modelers to create their own methods for doing so. The environment is...
Nuclear fuel management is an optimization problem on many levels. Finding “viable” solutions for the core reload design problem is difficult without expert knowledge and software automation. Small modular reactors with a shared used fuel pool demonstrate a novel opportunity for fuel cycle optimization.
A Python package was developed and...
The Department of Nuclear Engineering and Radiation Health Physics (NE/RHP) at Oregon State University (OSU) has been developing an innovative modular reactor plant concept since being initiated with a Department of Energy (DoE) grant in 1999.
This concept, the Multi-Application Small Light Water Reactor (MASLWR), is an integral pressurized water...
In open set recognition, a classifier must label instances of known classes while detecting instances of unknown classes not encountered during training. To detect unknown classes while still generalizing to new instances of existing classes, this thesis introduces a dataset augmentation technique called counterfactual image generation. This approach, based on...
DNA has a well-defined structural transition-the denaturation of its double-stranded form into two single strands-that strongly affects its thermal transport properties. We show that, according to a widely implemented model for DNA denaturation, one can engineer DNA 'heattronic' devices that have a rapidly increasing thermal conductance over a narrow temperature...
Various natural language processing (NLP) tasks necessitate deep models that are fast, efficient, and small based on their ultimate application at the edge or elsewhere. While significant investigation has furthered the efficiency and reduced the size of these models, reducing their downstream latency without significant trade-offs remains a difficult task....
As one of the most popular data types, the point cloud is widely used in various appli- cations, including computer vision, computer graphics and robotics. The capability to directly measure 3D point clouds is invaluable in those applications as depth information could remove a lot of the segmentation ambiguities in...
This thesis seeks to determine whether a self-driving car's behavior should depend on the hearing status of its passengers: namely, hard-of-hearing (including deaf) or hearing. It is believed that auditory deprivation provokes adaptations in visual attention. These adaptations may lead to atypical movement patterns that can translate to different driving...
Pathogen invasions pose a growing threat to ecosystem stability and public health. Guidelines for the timing and spatial extent of control measures for pathogen invasions are currently limited, however. We conducted a field experiment using wheat (Triticum aestivum) stripe rust, caused by the wind-dispersed fungus Puccinia striiformis, to study the...
How can rigorous forms of testing be supported in a way that is both compatible with the visual aspect of visual programming languages, and usable by the audiences using those languages - even when the audience has no background in software engineering? Visual programs are likely to contain at least...
Pseudoperonospora cubensis is an obligate pathogen and
causative agent of cucurbit downy mildew. To help advance
our understanding of the pathogenicity of P. cubensis, we
used RNA-Seq to improve the quality of its reference
genome sequence. We also characterized the RNA-Seq
dataset to inventory transcript isoforms and infer alternative
splicing...
Reinforcement learning has emerged as a popular tool for solving control tasks, with multiple works focusing on the complex and dynamic task of locomotion. However, the naive application of reinforcement learning to this problem often produces maladaptive policies that exploit the model or reward function. This results in behavior that...
Test case prioritization techniques schedule test cases for regression testing in an order that increases their ability to meet some performance goal. One performance goal, rate of fault detection, measures how quickly faults are detected within the testing process. The APFD metric had been proposed for measuring the rate of...
Papain-like leader proteases are found in diverse families of human, animal, plant, and fungal positive-strand RNA viruses. In addition to autocatalytic processing, these proteases play a variety of roles in the virus life cycle. In particular, the leader protease (L-Pro) of a prototype member of the Closterovirus genus, Beet yellows...
The Line Integral Convolution (LIC) is a mainstay of flow visualization. It is, however, computationally intensive, which limits its interactivity. Also, when used to view three-dimensional (3D) vector fields, the resulting images are dense and cluttered, making it difficult to perceive the flow on the interior parts of the field....
This honors undergraduate thesis examines the process of simulating power system state estimation, the use of the alternating direction method of multipliers in the problem of distributed power system state estimation, and provides a rudimentary asynchronous implementation of the above for a linearized DC power system. The asynchronous implementation is...
Autonomous robotic agents are on their way to becoming in-home personal assistants, construction assistants, and warehouse workers. The degree of autonomy of such systems is reflected by the manner in which we specify goals to them; the abstraction of low-level commands to high-level goals goes hand-in-hand with increased autonomy. In...
How should reinforcement learning (RL) agents explain themselves to humans not trained in AI? To gain insights into this question, we conducted a 124 participant, four-treatment experiment to compare participants’ mental models of an RL agent in the context of a simple Real-Time Strategy (RTS) game. The four treatments isolated...
Modeling tire-snow interaction is important in designing effective snow tires, which directly affects road safety during wintry weather. Unfortunately, tires have complex tread designs and the physical properties of snow have not been characterized. We employ the Material Point Method (MPM) for simulating a material that mimics the fracturing and...
This study investigates the microstructure and mechanical properties of an austenitic Oxide Dispersion Strengthened (ODS) steel produced by the Laser Directed Energy Deposition (LDED) process using powder feedstock atomized with elemental yttrium. The Microstructure of the samples was characterized by electron microscopy, and mechanical properties were measured using a tensile...
In recent years, model-free Deep Reinforcement Learning (RL) has become an increasingly popular alternative to more traditional model-based or optimization-based control methods in solving robotic legged locomotion. However, deploying RL in the real world can be a significant undertaking. Constructing reward functions which compel controllers to learn the desired behavior...
This thesis presents an automated methodology to calibrate the substrate profile for accurate prediction of substrate parasitics using Green's function based extractors. The technique requires fabrication of only a few test structures and results in an accurate three layered approximation of a heavily doped epitaxial silicon substrate. The obtained substrate...
In the 1970s and 1980s, there was considerable interest in near-equatorial variability at periods of days to weeks associated with oceanic equatorial inertia–gravity waves and mixed Rossby–gravity waves. At that time, the measurements available for studying these waves were much more limited than today: most of the available observations were...
This work is a culmination of a series of published works related to the use of the Material Point Method (MPM) in modeling wood adhesive bonds. The use of wood as construction material has the potential to play a small role in the solution to the current CO2 and climate...
(0) Save to: more options
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
Author(s): Howe, GT (Howe, Glenn T.)[ 1 ] ; Yu, JB (Yu, Jianbin)[ 1 ] ; Knaus, B (Knaus, Brian)[ 2 ] ; Cronn, R (Cronn, Richard)[ 2 ] ; Kolpak,...
A transient code (TFETC) for calculating the temperature
distribution throughout the radial and axial positions of a
thermionic fuel element (TFE) has been successfully developed.
It accommodates the variations of temperatures, thermal power,
electrical power, voltage, and current density throughout the
TFE as a function of time as well as...
Deep neural networks currently comprise the backbone of many applications where safety is a critical concern, for example: autonomous driving and medical diagnostics. Unfortunately these systems currently fail to detect out-of-distribution (OOD) inputs and can be prone to making dangerous errors when exposed to them. In addition, these same systems...
Small modular reactors (SMRs) are a recent advancement in commercial nuclear reactor design with growing interest worldwide. New SMR concepts, such as the Multi-Application Small Light Water Reactor (MASLWR), must undergo a licensing processes established by the U.S. Nuclear Regulatory Commission (NRC) prior to commercial operation. Given the lack of...
Time-dependent electronic transport is increasingly important to the state-of-the-art device design and fabrication. The development of nanoscale sensing, the harnessing and control of structural fluctuations, and the advancement of next-generation materials all require a treatment of quantum dynamics beyond the level of traditional methods and a more nuanced approach to...
RNA silencing pathways are required for a wide variety of processes in most
eucaryotes. In plants, small-interfering RNA (siRNA) arising from transposons and other
repetitive sequences is associated with heterochromatin formation and maintenance.
MicroRNAs and trans-acting siRNAs encoded at discrete loci function as negative regulators of
gene expression by triggering...
Marine sediments are vast sources and reservoirs of methane, a potent greenhouse gas. Most of this methane is anaerobically oxidized by archaea before it can reach the overlying ocean, though the efficiency of this process often depends on methane fluxes and mechanisms of fluid transport. Anaerobic methanotrophic archaea, or ANME,...
Miniaturized and portable microfluidic analytical platforms have been widely explored in the broad field of chemical analysis. The concept of microfluidics offer a number of important advantages, including low reagent consumption, low-cost detection, high sample throughput, and shorter analysis time. Semiconductor nanocrystals or quantum dots have been extensively utilized in...
Real-time, high efficiency neutron spectroscopy has, historically, been a persistent challenge in the field of radiation detection and, for the most part, has gone unsolved. The most promising method to resolve this challenge, is the boron-capture technique using an organic scintillation system (BC-523a). Detectors that utilize this method possess an...
In this thesis, we introduce a novel Explanation Neural Network (XNN) to explain the predictions made by a deep network. The XNN works by embedding a high-dimensional activation vector of a deep network layer non-linearly into a low-dimensional explanation space while retaining faithfulness i.e., the original deep learning predictions can...
Solid state luminescent sulfides are prepared as powders in order to elucidate the relationship between structure and light emission. While the sulfides studied in this dissertation are known phosphors, materials are investigated in a variety of new ways. Elementary properties and structures of MgS are reviewed, and preparation of MgS...
________________________________________________________________________
Dean of the Graduate School
I understand that my dissertation will become part of the
Dysferlin is a ∼230 kDa terminally anchored membrane protein that is ubiquitously expressed, but is particularly enriched in skeletal and cardiac muscle tissue. Mutations covering the length of the protein have been linked to muscle wasting diseases including limb-girdle muscular dystrophy and Myoshi myopathy. Dysferlin has been shown to play...
In this dissertation, we propose Ideal Thumbnail-Preserving Encryption (Ideal TPE), as a special case of format-preserving encryption, to balance image privacy and usability concerns in a cloud environment. We first introduce a concrete construction for Ideal TPE, that provably leaks nothing about the plaintext (unencrypted) image beyond its thumbnail. We...
State-of-the-art personal robots need to perform complex manipulation tasks to be viable in complex scenarios. However, many of these robots, like the PR2, use manipulators with high degrees of freedom. High degrees of freedom are desirable from a functionality standpoint, but make the learning task more difficult by adding a...
The dissertation focuses on the engineering of light-matter interaction using plasmonic nanoparticles and metamaterials to achieve enhanced luminescence and based on which to improve the performance of biosensing and light-emitting technologies. We designed and fabricated a spectrum of nanostructures to exhibit particular dispersion relations capable of controlling the spontaneous emission...
Regression testing is an expensive testing process used to validate changes made to previously tested software. Different regression testing techniques can have different impacts on the cost-effectiveness of testing. This cost-effectiveness can also vary with different characteristics of test suites. One such characteristic, test suite granularity, reflects the way in...
The development of micro total analysis systems (µTAS), also called “lab-on-a-chip”, or microfluidic analysis systems, is presented in this dissertation. Various research areas, covering subjects from magnetic particles synthesis to novel microchip fabrication techniques, are explored to develop a lab-on-a-chip system capable of performing magnetic bead-based bioassays. These devices are...
Distributed version control allows developers to manage software evolution among distributed development teams. But it does not eliminate all consistency and concurrency issues, and instead introduces additional complexity when merging code. And resolving merge conflicts is nontrivial when automated merging fails. In such cases, developers are forced to inspect the...