Daily cyclical changes of light are brought on by the axial rotation of the Earth while seasonal changes in light are caused by Earth’s tilt as it revolves around the sun. Major life history traits, such as development, which are tied to metabolic processes, have a strong link to the...
Climate change presents multiple stressors that are impacting marine life. As carbon dioxide emissions continue to increase in the atmosphere, atmospheric and sea water temperatures increase. In addition, more carbon dioxide is absorbed into the oceans, reducing pH and aragonite saturation state, resulting in ocean acidification (OA). Tightly coupled with...
Understanding of gene flow, connectivity, and diversity is critical to predict the stability of key marine species. The Oregon coast of the U.S.A. shows fine-scale levels of geographic variation in environmental stressors such as temperature, pH, and oxygen levels, prompting questions about the potential for local adaptation. In this thesis,...
Osmotic stress is a common challenge faced by organisms in environments with variable salinity or aridity. Understanding the evolutionary mechanisms underlying adaptation to osmotic stress may have wide applications, including management of populations experiencing climate change, or engineering industrial organisms involved in processes such as fermentation. While Saccharomyces cerevisiae is...
The role of gene expression in adaptation to differing thermal environments has been assayed extensively. Yet, in most natural systems, analyses of gene expression reveal only one level of the complexity of regulatory machineries. MicroRNAs (miRNAs) are small noncoding RNAs which are key components of many gene regulatory networks, and...
Echinoderms form an abundant and ecologically important group of marine animals, and they are found in nearly every marine environment, from shallow tropical waters to deep polar benthos and even in the pelagic zone. They exhibit a wide diversity of reproductive strategies that range from broadcasting millions of gametes, with...
Anthropogenic CO₂ emissions are shifting the global climate equilibrium, causing widespread losses in biodiversity. Anthozoan cnidarians are some of the species most vulnerable to environmental change. Environmental stress causes corals and sea anemones to expel their endosymbiotic algae, which constitute a primary source of nutrition for some Anthozoa. Carbonic anhydrase...
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FelipeS. Barreto, Committee Member, representing Department of Integrative Biology
According to a 2017 Pew Research Study, 44% of adults in America say that they do not feel informed enough about science to understand news and new discoveries discussed on the media (Funk et al. 2019). This is concerning, because adults are not just passive consumers of media; among other...
Single nucleotide polymorphisms (SNPs) can be used as markers to infer population genetic structure. For Mycoplasma cynos, a pathogen associated with infectious respiratory disease among canines and other animals, SNPs may help to elucidate ecological and evolutionary relationships among the strains that reside in the upper respiratory tract of canines...
Non-native ecosystem engineers, which modify the structure and function of their ecosystems, are often a particularly concerning and costly group of invasive species. Such organisms may have substantial impacts on ecosystem services, or the benefits that humans derive from their ecosystems. Many factors play a role in the invasion success...
Coral reefs have become vulnerable to climate change, with mass bleaching events, the loss of symbiotic algae (Symbiodiniaceae), increasing in both frequency and severity. As climate change continues to threaten the persistence and existence of coral reefs around the world, the biggest question posed for coral reefs is “can they...
The production of novel hybrid zones is an ecologically important consequence of globally increasing rates of species introductions and invasions. Interspecific hybridization can facilitate gene flow between parent species or produce novel taxa that may alter invasion dynamics or ecosystem services. The coastal sand dunes of the U.S. Pacific Northwest...
The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. In this thesis, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
The copepod Tigriopus californicus shows extensive population divergence and is becoming a model for understanding allopatric differentiation and the early stages of speciation. Here, we report a high-quality reference genome for one population (similar to 190 megabases across 12 scaffolds, and similar to 15,500 protein-coding genes). Comparison with other arthropods...
Connectivity of fish populations is a crucial question for fisheries conservation and the development of spatial management plans. Both adult and larval movement define the extent and direction of ecological and evolutionary overlap between geographic regions and, therefore, how we define stocks for management purposes. Within that context, my work...
The rates of biological introductions and invasions are increasing, driving up the associated harms to ecosystems and economies. The spread and effects of invasive organisms depend on the specifics of the introduction, the character of the invaded ecosystem, and multiple traits of the invasive organism itself. One mechanism by which...
Climate change and other anthropogenic impacts are threatening the existence of millions of species around the globe. On western continental boundaries, the large-scale secondary process of upwelling, which brings low pH, deoxygenated, high nutrient seawater to the surface, is compounded by climate change, that together could drive some species to...
Reef building corals are the foundation of an entire ecosystem, but they are threatened primarily by rising ocean temperatures due to climate change. Corals depend on a thermally sensitive symbiosis with intracellular dinoflagellates. As oceans warm, this symbiosis is disrupted and results in coral mortality, declining populations and degraded reefs....
A central challenge for ecology is to understand the dynamic nature of species interactions. A classic approach to community ecology assumes that individuals within a species are functionally identical and that consumer-resource dynamics can be predicted solely by using species abundances. However, one species can consist of multiple functional groups,...
Coral reefs, found in tropical regions, are renowned for their rich biodiversity and their contributions to ecological, cultural, and economic aspects worldwide. The success of coral reefs hinges on the symbiotic partnership between corals and their dinoflagellate algae, from the family Symbiodiniaceae. The algae reside within the coral host’s gastrodermal...