A bad software development process leads to wasted effort and inferior products. In order to improve a software process, it must be first understood. In this work I focus on understanding software processes.
The first process we seek to understand is Continuous Integration (CI). CI systems automate the compilation, building,...
This dissertation has two objectives. The first objective is to determine where best to situate the study of mentoring (i.e. the 'making of scientists') on the landscape of the history of science and science studies. This task is accomplished by establishing mentoring studies as a link between the robust body...
Themes of authorship in Aphra Behn's Oroonoko and Daniel Defoe's Robinson Crusoe highlight locations in the stories that expose the author's concerns with their responsibilities and contributions to society. In order to frame a discussion of authorship in Oroonoko and Robinson Crusoe, it is essential to position Behn and Crusoe...
Celebrity culture is part of a long history of fame, but the modern celebrity individual came into focus in the nineteenth century. The first part of this thesis distinguishes modern celebrity – including its morality – from other types of fame, explores the intersection of celebrity and gender through the...
This dissertation is about statistical methods for data analysis using generalized linear mixed models (GLMMs) with censored covariates. Special attention in given to the particular problem of inference about age-specific reproductive success in wild animal populations using some animals with known ages and some animals with ages only known to...
Abdominal obesity is a part of insulin resistance syndrome that is closely
linked to increased risk of coronary artery disease (CAD). Because fat tissue acts as
an endocrine target and source of hormone production, increased metabolism or
production of chemical messengers in fat tissue may result in metabolic perturbations
that...
Modeling of slope flow circulations in idealized axisymmetric craters is used to understand (1) the large surface pressure amplitude observed in Gale Crater by the Rover Environmental Monitoring Station and (2) the shallow convective boundary layer (CBL) suggested by Curiosity imagery. Air temperatures vary within craters with greater amplitudes than...
This paper empirically investigates three hypotheses regarding biases of National Basketball Association (NBA) referees. Using a sample of 28,388 quarter-level observations from six seasons, we find that referees make calls that favor home teams, teams losing during games, and teams losing
in playoff series. All three biases are likely to...
This thesis presents two conceptually linked papers outlining methodologies to improve community resilience. Both papers employ Seaside, Oregon as a testbed community and consider the seismic-tsunami hazard posed by the Cascadia Subduction Zone. The first paper presents a framework to deaggregate the results of a multi-hazard, multi-infrastructure, damage analysis by...
The DNA repair capabilities of rainbow trout (Salmo gairdneri)
were studied vising the method of autoradiography. Trout were fed a
semi-purified control diet containing 0 ppm, 50 ppm, or 300 ppm
cyclopropenoid fatty acids (CPFA) for 6-9 weeks. Liver slices were
prepared and exposed in vitro to a control treatment,...
The human pathogen Chlamydia trachomatis displays different phenotypes between serovars both in vivo and in vitro. The study of chlamydial biology has been hampered by the lack of a tractable genetic system. Here, chlamydial isolates with known phenotypes as well as strains generated though recombination were fully sequenced to address...
Understanding the drivers of species occurrence is a fundamental goal in basic and applied ecology. Occupancy models have emerged as a popular approach for inferring species occurrence because they account for problems associated with imperfect detection in field surveys. Current models, however, are limited because they assume covariates are independent...
Recent work has suggested that plants differ in their relative reliance on structural avoidance of embolism versus maintenance of the xylem water column through dynamic traits such as capacitance, but we still know little about how and why species differ along this continuum. It is even less clear how or...
A key uncertainty concerning the effect of wildfire on carbon dynamics is the rate at which fire-killed biomass (e.g., dead trees) decays and emits carbon to the atmosphere. We used a ground-based approach to compute decomposition of forest biomass killed, but not combusted, in the Biscuit Fire of 2002, an...
PURPOSE:
Little research has analyzed mistrust and discrimination influencing receipt of health care services among Latinos, particularly those living in rural areas. The present study examined the associations between medical mistrust, perceived discrimination, and satisfaction with health care among young-adult rural Latinos.
RESEARCH DESIGN:
This cross-sectional study analyzed data from...
Time can be a limiting constraint for consumers, particularly when resource phenology mediates foraging opportunity. Though a large body of research has explored how resource phenology influences trophic interactions, this work has focused on the topics of trophic mismatch or predator swamping, which typically occur over short periods, at small...
Tropical peatlands cover an estimated 440,000 km² (~10% of global peatland area) and are significant in the global
carbon cycle by storing about 40–90 Gt C in peat. Over the past several decades, tropical peatlands have experienced
high rates of deforestation and conversion, which is often associated with lowering the...
The primary objective of this thesis is to develop a process for fabricating integrated circuits based on thin-film transistors (TFTs) using zinc tin oxide (ZTO) as the channel layer. ZTO, in contrast to indium- or gallium-based amorphous oxide semiconductors (AOS), is perceived to be a more commercially viable AOS choice...
Stressful environmental conditions affect the adrenocortical function of developing animals, which can have consequences
for their fitness. Discovery of the avian stress hormone corticosterone (CORT) in feathers has the potential to broaden the
application of endocrine research in ecological and evolutionary studies of wild birds by providing a long-term measure...
Double-crested cormorants (Phalacrocorax auritus) have been identified as the source of significant mortality to juvenile salmonids (Oncorhynchus spp.) in the Columbia River Basin. Management plans for reducing the size of a large colony on East Sand Island (OR, USA) in the Columbia River estuary are currently being developed. We evaluated...
1. Foraging and migration often require different energetic and movement strategies. Though not readily apparent, constraints during one phase might influence the foraging strategies observed in another. For marine birds that fly and dive, body size constraints likely present a trade-off between foraging ability and migration as smaller bodies reduce...
There were two viable theories of generation, preformation
and epigenesis, existing in the Seventeenth and
Eighteenth Centuries. Due to their irreconcilable nature,
they were often at loggerheads during this time interval.
The status of these generation theories can be effectively
understood in terms of Thomas Kuhn's conception of preparadigm
science....
AIM: C₄ photosynthesis is an adaptation that maintains efficient carbon assimilation in warm and low-CO₂ conditions. Due to the importance of C₄ grasses for carbon and surface energy fluxes numerous models have been proposed to describe their spatial distribution and forecast responses to climate change. These models often rely on...
To reduce conflicts with fish resources, other colonial waterbirds, and damage to habitats, double-crested cormorants (Phalacrocorax auritus) are currently controlled (lethally and non-lethally) throughout much of their range. Concerns are growing over the Pacific Coast's largest double-crested cormorant colony at East Sand Island (ESI), Oregon near the mouth of the...
Heterotrophic respiration (HR), the aerobic and anaerobic processes mineralizing organic matter, is a key carbon flux but one impossible to measure at scales significantly larger than small experimental plots. This impedes our ability to understand carbon and nutrient cycles, benchmark models, or reliably upscale point measurements. Given that a new...
The interplay of natural selection and genetic drift, influenced by geographic isolation, mating systems and population size, determines patterns of genetic diversity within species. The sperm whale provides an interesting example of a long-lived species with few geographic barriers to dispersal. Worldwide mtDNA diversity is relatively low, but highly structured...
Billions of birds migrate at night over North America each year. However, few studies have described the phenology of these movements, such as magnitudes, directions, and speeds, for more than one migration season and at regional scales. In this study, we characterize density, direction, and speed of nocturnally migrating birds...
AIM: Species that breed sympatrically often occupy different foraging niches to mitigate competition for prey. When resource availability declines at the end of the breeding season, some animals migrate to regions with more favourable environmental conditions. When these life-history traits combine, foraging habitat preferences may continue to influence migration patterns...
The sagebrush steppe ecosystem of the Columbia Plateau has become degraded by a long history of alternative land use and associated perturbations. Protection of remnant stands of intact sagebrush steppe currently relies upon their preservation within the nation's network of parks and protected-areas. The John Day Fossil Beds National Monument,...
A qualitative research approach composed of three strategies was employed to systematically examine the politics of natural resource collaboration. First, using the Oregon Plan for Salmon and Watersheds as a case study, the behavioral assumptions of natural resource policy instruments enabling collaboration were uncovered and analyzed. Three key assumptions emerge:...
This article describes the Latino Health Ambassadors Network (Voceros de Salud) project created to support and mobilize Latino community leaders to address health inequalities in a rural Oregon county. Voceros de Salud is discussed as a model that other rural communities may implement towards strengthening Latino civic engagement for health.
High-elevation aquatic ecosystems are highly vulnerable to climate change, yet relatively few records are available to characterize shifts in ecosystem structure or their underlying mechanisms. Using a long-term data set on seven alpine lakes (3126 to 3620 m) in Colorado, USA, we show that ice-off dates have shifted 7 days earlier over...
Livestock fences have been hypothesized to significantly contribute to mortality of lesser prairie-chickens (Tympanuchus pallidicinctus); however, quantification of mortality due to fence collisions is lacking across their current distribution. Variation in fence density, landscape composition and configuration, and land use could influence collision risk of lesser prairie-chickens. We monitored fences...
The process of plant speciation often involves the evolution of divergent ecotypes in
response to differences in soil water availability between habitats. While the same set of traits
is frequently associated with xeric/mesic ecotype divergence, it is unknown whether those
traits evolve independently or if they evolve in tandem as...
The status of the double-crested cormorant (Phalacrocorax auritus) in western North America was last evaluated during 1987–2003. In the interim, concern has grown over the potential impact of predation by double-crested cormorants on juvenile salmonids (Oncorhynchus spp.), particularly in the Columbia Basin and along the Pacific coast where some salmonids...
The fish early-life stage (FELS) test (Organisation for Economic Co-operation and Development [OECD] test guideline 210) is the primary test used internationally to estimate chronic fish toxicity in support of ecological risk assessments and chemical management programs. As part of an ongoing effort to develop efficient and cost-effective alternatives to...
The prevalence of childhood illness requiring hospitalization establishes the need for implementation of an applied intervention to decrease levels of hospitalization-induced anxiety in pediatric patients. In addition to anxiety, levels of perceived trauma have also been linked to pre-operative pediatric patients. Child-Centered Play Therapy (CCPT) within the medical setting has...
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Daniel Stroud
The prevalence of childhood illness requiring hospitalization establishes
The majority of our modern understanding of bacterial pathogenesis is based on the strategy that involves screening bacterial genomes for the presence of the genes encoding pathogenic factors, and analysis of these genes via forward and reverse genetics. Chlamydiae represent a unique group of pathogenic bacteria in which it is...
Models are commonly used to assess and predict wildlife response to management practices. Model validation is essential if managers are to use them with confidence. Fifteen forest bird-habitat relationship models were developed by biologists using data collected from private forestland in southwest Washington. These models predict species' probability of occurring...
Over the last decade the world has seen three major tsunamis strike the coasts of
Indonesia, Samoa, and Chile. These tsunamis have caused significant losses of life and
property on the coastal cities of these and nearby countries. The NEES (Network for
Earthquake Engineering Simulation) Housesmash project was created to...
Coastal vegetation dampens waves which can provide benefits to the local area, but existing literature shows large variations in the degree of wave height attenuation depending on plant properties and wave conditions. Better knowledge of how to predict the wave height decay accurately in different types of vegetation may help...
The Kittlitz's murrelet (Brachyramphus brevirostris) is a rare member of the seabird family Alcidae that breeds in coastal areas of Alaska and Beringian Russia. The species belongs to the genus Brachyramphus, an unusual seabird taxon in which all three extant species nest non-colonially, situating their nests up to 75 km...
Triphenylmethyl dye cyanides have been known to be sensitive to ultraviolet radiation since early in this century. Under appropriate conditions, exposure to uv leads to heteropolar fission of the C-CN bond (photoionization) and intense coloration due to dye formation. Thin homogeneous films of hexahydroxyethyl pararosaniline cyanide in a nylon matrix...
As ornamental container nurseries face diminishing water allocations, many are looking to automated irrigation solutions to increase their water application efficiency. This thesis presents the findings of a study conducted at a commercial container nursery to determine 1) whether a capacitance or load cell sensor was better suited for monitoring...
In this thesis a relatively new topological technique, due to A. Granas, called Topological Transversality is used to obtain existence theorems for initial and boundary value problems in a variety of settings. This fixed point result is based on the notions of an essential map and on a priori bounds...
Composites often are able to carry more load after damage due to the structure of laminates. In addition, damage can be difficult to detect in composites compared to homogeneous materials. Understanding the behavior of composite material after damage is vital for composite structural design. Currently, experimental methods exist for classifying...