About 48 million cases of Foodborne illnesses (FBIs) are estimated to occur every year in the US. These are diseases caused by contamination of foods with bacteria, viruses, protozoa, parasites and toxic chemicals. Clostridium difficile infections (CDIs) are an important health-care and community associated problem. Since C. difficile spores have...
The Australian Harvest Strategy Policy requires that maximum economic yield (MEY) be the target in all Commonwealth managed fisheries. For multispecies fisheries, unlike single species fisheries, the optimal yield is not independent of the optimal yield of the companion species (i.e. those species with which it is caught). In fisheries...
With the development of the ecosystem approach to f
isheries (EAF), fisheries management is
increasingly required to deal with multiple, often
conflicting objectives. In this context, the
stochastic co-viability approach has been proposed
as a useful modeling framework as it allows
for the combined representation of complex fisherie
s dynamics,...
This dissertation addresses the problem of semantic labeling of image pixels. In the course of our work, we considered different types of semantic labels, including object classes (e.g., car, person), 3D depth values (in the range 0 to 80 meters), and affordance classes (e.g., walkable, sittable). Semantic pixel labeling is...
This dissertation focuses on the analysis, design, and application of inductor-capacitor (LC) oscillators for wireless sensor networks (WSNs).
First an analysis and design optimization approach for enhanced swing, low power CMOS LC oscillators is presented. A phasor based analysis is used for determining the amplitude and phase noise of these...
The conventional advection-dispersion equation cannot adequately describe all processes driving
solute transport in heterogeneous systems. This dissertation focuses on the individual influences
of both chemical (Chapter 2) and physical processes (Chapters 3 and 4) which affect
solute transport. In Chapter 2 we analyzed uranium transport in natural sediment using the...
In field studies of solute transport, transient storage within lateral cavities and other stream features generates
breakthrough curves (BTCs) with pronounced and persistent skewness. Current solute transport
theory requires that the coefficient of skewness (CSK) decrease over time because the system eventually
reaches Fickian conditions. However, published data show that...
A new enhanced swing class-D VCO which operates from a supply voltage as low as 300 mV is presented. The architectural advantages are described along with an analysis for the oscillation frequency. Prototype differential and quadrature variants of the proposed VCO have been implemented in a 65 nm RF CMOS...
Genome instability is a prerequisite for the development of cancer. It occurs when genome maintenance systems fail to safeguard the genome’s integrity, whether as a consequence of inherited defects or induced via exposure to environmental agents (chemicals, biological agents and radiation). Thus, genome instability can be defined as an enhanced...
Lifestyle factors are responsible for a considerable portion of cancer incidence worldwide, but credible estimates from the World Health Organization and the International Agency for Research on Cancer (IARC) suggest that the fraction of cancers attributable to toxic environmental exposures is between 7% and 19%. To explore the hypothesis that...
Australian Commonwealth fisheries have adopted maximum economic yield as a target reference point. A bioeconomic model has been developed for one key fishery - the Northern Prawn Fishery - and is used in the provision of management advice. The development and application of this model has highlighted some challenges for...
The exchange of carbon dioxide is a key measure of ecosystem metabolism and a critical intersection
between the terrestrial biosphere and the Earth’s climate. Despite the general agreement that
the terrestrial ecosystems in North America provide a sizeable carbon sink, the size and distribution
of the sink remain uncertain. We...
Full Text:
; Deng et al., 2007;
iao et al., 2011a), the size and distribution of this sink are not
ell quantified
Numerical weather prediction models often perform poorly for weakly forced, highly variable winds in nocturnal stable boundary layers (SBLs). When used as input to air-quality and dispersion models, these wind errors can lead to large errors in subsequent plume forecasts. Finer grid resolution and improved model numerics and physics can...
We live on an Urban Planet. The current unprecedented urbanization is accompanied by intensive land cover transition and demographic shifts from rural to urban livelihoods. Cities serve as cultural, economic, political centers that facilitate wealth creation and innovation of the society, sustaining human from multi-dimensions with large ecological footprints far...
Lactose intolerance is a common food intolerance that occurs because of a post-weaning deficiency of lactase, an enzyme that cleaves the glyosidic bond of lactose. About 75% of the world's population is lactose intolerant. Common symptoms of lactose intolerance are abdominal pain, bloating and diarrhea. ~25% of the world’s population...
There are many benefits provided by trees in urban areas. While there are many recommendations on maximizing the returns from urban trees, there has been little research examining how these managers are prioritizing their tree species selection. A survey instrument was constructed to survey Tree City USA designated cities across...
Environmental contributions to cancer development are widely accepted, but only a fraction of all pertinent exposures
have probably been identified. Traditional toxicological approaches to the problem have largely focused on the effects of
individual agents at singular endpoints. As such, they have incompletely addressed both the pro-carcinogenic contributions
of environmentally...
Full Text:
-21.
114. Roy, J., et al. (2010) Acrolein induces apoptosis through the death receptor pathway in
Metal-organic frameworks (MOFs) are crystalline porous material distinguished for high free empty volume and pore tunability. MOF-74(Ni) was previously shown to be effective in adsorbing carbon dioxide, methane, and hydrogen. Microwave-assisted synthesis of MOF-74(Ni) was shown to lower reaction time from days to hours. In this thesis, experimental conditions of...
The following experiment presented herein compared growth, physical activity, stress-related responses, and puberty attainment in heifers reared on high- (HIDENS) or low-stocking densities (LOWDENS). Sixty Angus x Hereford heifers were ranked by age and BW (210 ± 2 d and 220 ± 2 kg, respectively) on d 0, and assigned...
Diagnostic carbon cycle models produce estimates of net ecosystem production (NEP, the balance of net primary production
and heterotrophic respiration) by integrating information from (i) satellite-based observations of land surface
vegetation characteristics; (ii) distributed meteorological data; and (iii) eddy covariance flux tower observations of
net ecosystem exchange (NEE) (used in...
Many humans and canines alike suffer from osteosarcoma, which is often metastatic, resistant to chemotherapy, and frequently fatal. The mechanisms through which osteosarcoma cells acquire resistance to chemotherapy are not entirely understood, and the role of exosomes as intercellular mediators of this resistance in osteosarcoma is unknown. Using established canine...
Structure-property relationships in ferroelectrics extend over several length scales from the individual unit cell to the macroscopic device, and with dynamics spanning a broad temporal domain. Characterizing the multi-scale structural origin of electric field-induced polarization reversal and strain in ferroelectrics is an ongoing challenge that so far has obscured its...
Microplastics are widely distributed in aquatic environments. The term ‘microplastics’ encompasses a wide array of particles with unique polymer constituents, morphologies, and sources, such as automobile tire tread. Tire wear particles (TWP) can end up in waterways near densely populated municipalities, where they can interact with aquatic biota. Studying the...
This paper discusses opportunities for developments in spatial clustering methods to help leverage broad scale community science data for building species distribution models (SDMs). SDMs are critical tools that inform the science and policy needed to mitigate the impacts of climate change on biodiversity. Community science data span spatial and...
In the Pacific Northwest (PNW), concern about the impacts of climate and land cover change on water resources and flood-generating processes emphasizes the need for a mechanistic understanding of the interactions between forest canopies and hydrologic processes. Detailed measurements during the 1999 and 2000 hydrologic years were used to modify...
The objectives were to investigate the ability of a two-factor
central composite rotatable design (CCRD), using cooking temperature
(CT) and endpoint temperature (ET) as independent variables, to
predict selected chemical, physical and sensory meat quality
characteristics considered important by the industry, researcher and
consumer alike. Response surface analysis (RSA) was...
In this paper, a Direction of Arrival (DOA) based system is proposed. This method searches the direction relative to the array to find where the signal source is located. The proposed system can achieve sub-meter level accuracy with a near real-time update rate. Also, we introduced several refinement methods including...
The rising demand on freshwater resources emphasizes the benefit of biogeochemical processes that maintain clean water by removing pollutants such as excess nitrogen. The most sensitive step in the removal of nitrogen from waterways is the oxidation of ammonia, a part of nitrification, which is carried out by ammonia oxidizing...
This thesis consists of three manuscripts addressing separate components of barley breeding, plus an introduction and a conclusion summarizing the status of barley in the Pacific Northwest, plus the implications of the research presented in this thesis. In the first manuscript, a package written for the statistical software "R" that...
The spatial distribution of forest disturbance is commonly calculated using a satellite imagery-driven bi- or tri-temporal change analysis. Working in Colombia’s Cordillera de los Picachos National Natural Park – a region of consistent cloud cover and dramatic topographic relief – a change assessment with such infrequent observations cannot capture long-term...
Ample research has demonstrated the largely untapped potential of bioactive peptides (BAPs) for treating systematic chronic inflammation (SCI). Protein hydrolysates are the mixture of peptides resulting from the hydrolytic breakdown of a protein. Numerous hydrolysates contain BAPs and exert beneficial effects in both in vitro and in vivo models. In...
Development in China over the last thirty years has emphasized infrastructural and economic advancement. Despite enormous gains in living standards in the industrialized eastern provinces, much of China's interior and western provinces remain relatively underdeveloped. Populated mostly by ethnic minorities, the southwest province of Yunnan (meaning south of the clouds)...
Auditory defects and disorders are prevalent at all ages and affect 8% of the population in developed nations including newborns and children. Congenital hearing loss is the most common birth defect and it is estimated that 1 in 1000 children are affected by deafness at birth or before the onset...
The dissertation focuses on the engineering of light-matter interaction using plasmonic nanoparticles and metamaterials to achieve enhanced luminescence and based on which to improve the performance of biosensing and light-emitting technologies. We designed and fabricated a spectrum of nanostructures to exhibit particular dispersion relations capable of controlling the spontaneous emission...
Oxidative stress that occurs during cryopreservation may be reduced by the addition of antioxidants. Vitamin E (Vit E), Vitamin C (Vit C), glutathione (GSH), lipoic acid (LA), glycine betaine (GB) and polyvinylpyrrolidone (PVP) were applied at four steps of the PVS2 vitrification protocol (pretreatment, loading, rinsing, and regrowth). Shoot tips...
Semantic image segmentation is a relatively difficult task in computer vision. With the advent of deep learning, semantic image segmentation is increasingly of interest for researchers because of the excellent predictions from Convolutional Neural Network (CNN). However, CNNs have proven to struggle with obtaining global context of image due to...
Reasoning about 3D shape of objects is important for successful computer visionapplications in robotics, 3D rendering and modeling. In this thesis, we address twoproblems { First, given an image, we generate 3D shape of the foreground object thatappears in the image. Second, we predict the class label of the input...
Converting CO2 to valuable materials is attractive.Herein, we report using simple metallothermic reactions to reduce atmospheric CO2 to dense nanoporous graphene. By using a Zn/Mg mixture as a reductant, the resulted nanoporous graphene exhibits highly desirable properties: high specific surface area of 1900 m2/g, a great conductivity of 1050 S/m...
Full Text:
) 12881–12898.
[2] S.C. Roy, O.K. Varghese, M. Paulose, C.A. Grimes, ACS Nano 4
(2010) 1259–1278.
[3] W
The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea...
Full Text:
with marine in-
vertebrates. III. Specificity and infectivity of Symbiodinium microadriaticum. P Roy
Genome-enabled mycology is a rapidly expanding field that is characterized by the pervasive use of genome-scale data and associated computational tools in all aspects of fungal biology. Genome-enabled mycology is integrative and often requires teams of researchers with diverse skills in organismal mycology, bioinformatics and molecular biology. This issue of...
The biogeochemical processes that occur in marine sediments on continental margins are complex; however, from one perspective they can be considered with respect to three geochemical zones based on the presence and form of methane: sulfate-methane transition (SMTZ), gas hydrate stability zone (GHSZ), and free gas zone (FGZ). These geochemical...
The continuous development of higher performing battery materials has emerged in parallel with the development of new manufacturing processes. Nanomaterials are one solution to addressing the cycling and performance challenges that limit existing battery cells. However, many of the methods used today for nanomaterial synthesis are high temperature batch methods...
A taxonomic study of the genus Ophionectria Saccardo is presented.
The genus is described and the only remaining species, the type species,
Ophionectria trichospora, is described and figured. Ophionectria
trichospora is compared with Nectria haematococca to define relationships
between the two genera.
All other species formerly placed in Ophionectria are...
This dissertation addresses object recognition in challenging settings, where distinct object classes are visually very similar (e.g., species of birds and insects) and/or access to training examples of object classes is limited (e.g., due to the associated high costs of data annotation). In this dissertation, we present a variety of...
This study focuses on one widespread characteristic of poor soil quality: hydrophobic soil. Previous research has produced conclusive evidence to show that soil hydrophobicity is affected by soil organic matter (SOM) and soil water content (WC). Hydrophobicity that responds to changes in WC is a unique form of surface hydrophobicity...
Connecting with nature is associated with social, physical, and emotional benefits such as stress relief, improved physical health, and lower crime. Parks and other natural areas offer spaces in which to connect with nature and reap these and other benefits (e.g., family bonding, social events, learning). Despite increasing populations of...
Hand detection is a fundamental step for many hand-related computer vision tasks, such as gesture recognition, hand pose estimation, hand sign language translation, and so on. However, robustly detecting hands is a challenging task because of drastic changes in appearance based on finger articulation and changes in lighting conditions, camera...
This comprehensive bibliography is collection of refereed research related to climate change, wetlands and wetland restoration published before January 1, 2008.
Full Text:
rivers
(India). SCIENCE OF THE TOTAL ENVIRONMENT 212 (2-3): 89-105. 8 APR 1998.
Deng, Y., Ogden, J