Background information is presented that provides historical perspectives on the field of mycology in the Pacific Northwest and its role in forest management. The series of events and decisions that have led to previous studies (or lack of studies) in the field also dictate the directions of current research. Culture,...
In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short
interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target
loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing
response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has...
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Giampetruzzi2¤c, Mayra T. Garcia
Ruiz1¤d, Michaela G. McGinn1¤e, Nicholas Lowery2¤f, Maria T. Martinez Baladejo1
Le future du secteur de la pêche en Andalousie doit être analysé dans le contexte d'une stratégie de développement régional liée a une économie de plus en plus mondialisée.
l'union européenne, d'où l'Andalousie en fait partie, veut-elle être productrice de poisson, ou bien, exclusivement une commerçante des produits pêcheurs? la...
Le futur du secteur de la pèche en Andalousie doit être analyse dans le contexte d'une stratégie de développement régional liée a une économie de plus en plus mondialisée. L'union européenne, d'où l’Andalousie fait partie, veut-elle être productrice de poisson, ou bien, exclusivement une commerçante des produits pécheurs? la question...
A dynamic bioenergetic model for Steller sea lions (Eumetopias jubatus) was built using the STELLA simulation modeling system. The model is intended as an aid for the exploration of ecological questions regarding growth and survival of immature Steller sea lions (ages 1-3) living along the Oregon coast under different nutritional...
Harmful algal blooms (HABs) are a problem for coastal communities, the fishing industry, and coastal organisms. Pseudo-nitzschia spp. is a regularly occurring diatom in Oregon’s coastal waters. At times, Pseudo-nitzschia spp. can facultatively produce domoic acid, a neurotoxin that can bioaccumulate in the food chain. While regular shore-based sampling provides...
Dynamic seascapes, which are classified using a combination of remotely sensed data and model output, represent a potential tool for dynamic ecosystem-based management in marine systems. This work explores the utility of seascape classification in the context of marine resource management by examining two case studies: one involving biological relationships...
This dissertation presents a different approach to understanding how amphibians are responding to disease through ontogeny. Although numerous efforts have been conducted to understand host responses to the fungus Batrachochytrium dendrobatidis (Bd), studies have been restricted to distinct developmental stages. This dissertation provides information on host response to Bd across...
Although computer science (CS) education researchers and practitioners have found ways to improve CS classroom inclusivity, few researchers have considered inclusivity of online CS education. We have begun developing a new approach that we term “embedded inclusive design” to address inclusive CS. The essence of the approach is to integrate...
The main purpose of this research is to provide the
commercial seafood industry of the Pacific Northwest
information on preferences of restaurateurs, retailers, and
wholesalers for whole albacore, low-value added albacore
products (chunks, medallions, and steaks), albacore loins,
and high-value added albacore products (hot smoked and lox).
All of these...
Breast cancer is the most common cancer among women as it accounts for about 25% of all female cancer cases. Studies have shown that early detection of breast cancer increases the chances of a positive prognosis amongst patients therefore it is crucial to provide accurate diagnosis tools in routine exams....
Tuna fishery is an important activity worldwide. In the
eastern Pacific Ocean the effort applied by the Pacific Ocean
fleet to catch tuna fish is considerable. The eastern Pacific
tuna fleet harvests throughout the oceans and captures an
important fraction of this resource. For instance, in 1980 the
total catch...
Health benefits obtained from consumption of fruits and vegetables have the potential to improve the lifestyle of individuals. The walnut is a polyunsaturated fatty acid (PUFA)-rich whole food that is readily available in the U.S and has been shown to potentially reduce risk of Metabolic Syndrome. Furthermore, consumption of polyphenol...
Community colleges serve various populations as part of their missions. Many community colleges serve the people who live in rural communities and are challenged with fewer financial resources. The term rural is not easily defined, and many variables need to be considered when creating academic programming for rural populations. There...
We examined the extent to which arbuscular mycorrhizal (AM) fungi root improved the acquisition of simple organic nitrogen (ON) compounds by their host plants. In a greenhouse-based study, we used quantum dots (fluorescent nanoparticles) to assess uptake of each of the 20 proteinaceous amino acids by AM-colonized versus uncolonized plants....
Forest ecosystems of the Pacific Northwest of the USA are changing as a result of climate change. Specifically, rise of global temperatures, decline of winter precipitation, earlier loss of snowpack, and increased summer drought are altering the range of Pinus contorta. Simultaneously, flux in environmental conditions within the historic P....
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Ectomycorrhizal communities of ponderosa pine and lodgepole
pine in the south-central Oregon pumice zone
Maria O
Forest ecosystems of the Pacific Northwest of the USA are changing as a result of climate change. Specifically, rise of global temperatures, decline of winter precipitation, earlier loss of snowpack, and increased summer drought are altering the range of Pinus contorta. Simultaneously, flux in environmental conditions within the historic P....
Forest ecosystems of the Pacific Northwest of the USA are changing as a result of climate change. Specifically, rise of global temperatures, decline of winter precipitation, earlier loss of snowpack, and increased summer drought are altering the range of Pinus contorta. Simultaneously, flux in environmental conditions within the historic P....
Forest ecosystems of the Pacific Northwest of the USA are changing as a result of climate change. Specifically, rise of global temperatures, decline of winter precipitation, earlier loss of snowpack, and increased summer drought are altering the range of Pinus contorta. Simultaneously, flux in environmental conditions within the historic P....
Oceanic fronts mark the boundary between two water masses and are often sites of complex bio-physical processes and multi-trophic level interactions, making them particularly important features in marine ecosystems. As global climate change induces multi-scale shifts in the driving physical mechanisms of fronts, spatiotemporal tracking of frontal variability can aid...
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Maria T. Kavanaugh & Yvette H. Spitz
Oceanic fronts mark the boundary between two
Intraseasonal oscillations in the atmosphere-ocean system can affect weather patterns and regional ecosystems. In turn, these oscillations can be affected by climate variability, resulting in additive and/or non-linear responses of regional ecosystems to climate forcing. In the Northern California Current, a strong correlation was identified between the location of the...
The genus Phytophthora comprises numerous plant pathogens in both natural and managed ecosystems. For Phytophthora spp. that infect roots, dispersal occurs in soil water through a combination of advection and swimming of specialized motile propagules (zoospores). Specific biological and physico-chemical processes, however, remain poorly understood, due to difficulties in studying...
Geospatial data analysis is a multifaceted discipline encompassing the collection, processing, and visualization of diverse datasets. It models and delineates the interactions of people, objects, and phenomena within geographical spaces and predicts patterns based on the relationships between different locations. Despite significant advancements in geospatial data engineering and analytics over...
Solanum species differ in their degree of frost tolerance and cold acclimation capacity. Cultivated potato species of Solanum tuberosum L. are frost-sensitive, incapable of cold acclimation, and have a maximum freezing tolerance of –3°C. Solanum commersonii Dun is frost-tolerant and can survive to –5ºC pre-acclimation and –10ºC post-acclimation. Breeding attempts...
This essay provides an assessment of the human, social and financial resources that Oregon Latino immigrant-serving nonprofits have available to achieve their mission of promoting Latino immigrant integration and civic engagement practices. Under the framework of immigrant integration, this study examines the strategies Latino nonprofits rely upon to achieve their...
It is uncertain how predicted changes in climate will impact vegetation responses and plant species’ distributions because the physiological mechanisms underlying thresholds for damage are not well understood, and responses to stress vary by functional type and developmental stage. Thus, it is crucial to investigate physiological responses to heat and...
The feasibility of using hollow fiber ultrafi1tration
for clarification, stabilization and preservation of white
grape juice was evaluated. Flux and process parameters of
a hollow fiber membrane ultrafi1tration unit (Romicon pilot
scale, model FXS-MXII), were studied using white Riesling
grape juice. Optimum processing conditions were determined
for different nominal membrane...
Italian ryegrass populations have been identified with evolved resistance to glyphosate in orchards with a history of glyphosate use. Two of these populations were selected to investigate the inheritance of glyphosate resistance. The mechanisms involved in the herbicide resistance were an altered target site for the population SF and reduced...
There is no information available on water management of birdsfoot
trefoil grown for seed. Information is also not available describing how to
minimize seed losses due to shattering in order to obtain consistently high
birdsfoot trefoil seed yields. The objectives of this research are to: (i) quantify
crop water use,...
The following experiment presented herein compared growth, physiological, and reproductive responses of beef heifers with (MI) or without (CON) access to a creep-feeder, as a manner to stimulate metabolic imprinting while nursing their dams. On d 0 of the experiment, 60 Angus × Hereford heifers were ranked by initial BW...
Common root rot is a major disease of commercially grown snap bean (Phaseolus vulgaris L.) on the irrigated sandy soils of central Wisconsin. The objective of this study was to determine the relationships between soil properties and suppressiveness to common root rot of snap bean (causal agent Aphanomyces euteiches) in...
This study examined water scarcity and vulnerability in Quintana Roo, along the northern Caribbean coast of Mexico where rapid growth of tourism in the past 40 years has limited the ability of rural and urban communities to obtain safe, reliable, and equitable access to water services and critical water infrastructure...
Red radish anthocyanin extract (RAE) was investigated for coloring brined
cherries as an alternative to FD&C Red No. 40. Red radish (Raphanus sativus L.)
anthocyanins were extracted from liquid nitrogen powdered epidermal tissue using
acetone, partitioned with chloroform, and isolated using C-18 resin. The monomeric
anthocyanin content was determined by...
Red radish (Raphanus sativus L.) anthocyanins were extracted from liquid
nitrogen powdered epidermal tissue using acetone and chloroform and isolated using
C-18 resin. Chemical structure and conformation of major pigments were elucidated
by 1-D and 2-D NMR, Mass Spectroscopy, HPLC, and spectral analyses. Two novel
di-acylated anthocyanins, pelargonidin 3-0-[2-0-(β-D-glucopyranosyl)-(6-0- trans-p-coumaroyl-...
Amyotrophic lateral sclerosis (ALS) is characterized by the degeneration of motor neurons in the motor cortex and spinal cord. Recent evidence suggests that the purine receptor P2X7 (P2X7R) plays a central role in the pathology of ALS. Previous research indicates that P2X7R activation by oxidatively modified heat shock protein 90...
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Maria Franco, Committee Member, representing Biochemistry and Biophysics Department
The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Management objectives of vulnerable fish species must focus on maintaining healthy population status. Hence, reference points should be constrained to ensure recruitment. We assessed bioeconomic reference points for the totoaba (Totoaba macdonaldi), an endemic fish to the Gulf of California, reaching lengths of 2 m and 25 years. Totoaba fishing...
This dissertation investigates the context-dependency of species interactions between seagrass and macroalgae in upwelling-influenced estuaries. In all coastal systems, nutrient loading is multidirectional, resulting from mostly freshwater and marine inputs. The directionality of nutrient inputs may affect the rate of supply of organic matter to the system. In systems where...
Patterns of primary productivity in the Arctic are expected to change with continued warming, yet productivity measurements are historically limited, both spatially and temporally. An established method of measuring net biological oxygen production, which can be used to estimate net community production (NCP) rates, is with an equilibrated inlet mass...
For the last 30 years, the population of Mexico has grappled with overweight, obesity, and associated chronic diseases, such as type-2 diabetes and hypertension. To standardize care among healthcare providers and dietitians, an official nutritional guideline was published in the early 2000s, which included a non-modifiable food-based dietary guideline in...
Developing accurate predictive distribution models requires adequately representing relevant spatial and temporal scales, as these scales are ultimately reflective of the relationships between distributions and influential environmental conditions. In this research, we considered both spatial and temporal scale and the influence each has on predicting broad-scale distributions of two disparate...
Energetic resources transferred between distinct habitats or ecosystems, referred to as allochthonous resources, can greatly subsidize consumers in the recipient habitat, and thus influence food web structure and dynamics. Such subsidies may allow the growth of the consumer population to be decoupled from in situ productivity with effects on consumer...
Skeletal muscle mitochondria are highly plastic organelles, integral to whole-body health. High-fat diet (HFD) and exercise remodel the skeletal muscle mitochondria. Whereby, altered skeletal muscle mitochondrial function is linked to decreased skeletal muscle insulin sensitivity which can be reversed by exercise. However, the mechanisms that contribute to skeletal muscle remodeling...
Research relying on remotely sensed data on land use and deforestation has exploded in recent years. While satellite-based measures have clear advantages in terms of coverage, the presence of measurement error within these products is often overlooked. Here, we detail the econometric implications of these errors when analyzing the determinants...
This contribution aims to provide an economic assessment of the seabream and seabass industry in the Mediterranean, in order to describe the recent development and current situation of the economy and markets of this industry. It focuses on analyzing the economic and financial structure at different levels of aggregation (industry,...
In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has...
Vadose zone fractures and soil cracks exposed to the atmosphere have an impact on gas exchange processes at the Earth-atmosphere interface. In this study we explored and quantified the role of ground-surface winds on fracture ventilation. While the governing physical mechanisms that cause ventilation are relatively well understood, this is...
Latinos are the largest and most rapidly growing ethnic minority in the United States, and they have the highest dropout rates of any major ethnic group in the country (U.S. Department of Labor, 2003). Latinos' educational attainment is consistently lower than that of other students (Gandara, 2008). The majority of...