This study represents an internship, as a requirement of the Professional Science Masters program at Oregon State University, performed with Western Ag Innovations Inc. The study consisted of two aspects -- one business and one science oriented. The two objectives of this internship were to: 1) qualitatively evaluate how two...
A common problem in postal surveys of human populations
arises when some of the sampled people fail to respond to the questionnaire.
The problem is that the answers provided by the respondents
may not be typical of the answers the nonrespondents would
provide if these had been solicited more successfully....
As part of a participatory research project, where farmers and Oregon State University researchers collaborated, aspects of potato (Solanum tuberosum L.) growing systems were studied. It was determined through conversations with the farmers that quantification of certain growth parameters of potato was lacking, including dry matter accumulation, crop nitrogen (N)...
In order to properly utilize organic amendments as nitrogen sources, reliable methods
to estimate plant-available nitrogen (PAN) are needed. The objectives of this study
were to (1) evaluate the use of crop and soil responses in fertilizer N equivalence
(FNE) calculations, (2) examine the relationships between the C/N ratio, total...
Quantifying labile phosphorus (P) pools in biosolids is needed to manage biosolids for both agronomic and environmental purposes. Phosphorus indices originated in an effort to protect surface water quality from-non-point-agricultural P inputs. The objectives of this research were to: (1) evaluate soil test components of the western Oregon P index...
The decline of many Pacific salmon stocks has stimulated interest in the early life history and habitat requirements of juvenile salmon. Although estuarine habitat associations of juvenile salmon have been investigated in many coastal areas of the eastern Pacific Ocean, until recently, little was known about juvenile salmonid ecology within...
Anadromous coastal cutthroat trout Oncorhynchus clarkii clarkii may be highly dependent on estuaries, passing through them multiple times during their lifetime. However, few studies have investigated estuarine use by coastal cutthroat trout and it is often thought that estuaries serve primarily as migration corridors rather than rearing areas. We used...
Heatmap regression has became one of the mainstream approaches to localize facial landmarks. As Convolutional Neural Network (CNN) and Recurrent Neural Network (RNN) are becoming popular in solving computer vision tasks, extensive research has been done on these architectures. However, the loss function for heatmap regression is rarely studied. In...
The abilities of plant biologists to characterize the genetic basis of physiological traits are limited by their abilities to obtain quantitative data representing precise details of trait variation and mainly to collect this data on a high-throughput scale at low cost. Deep learning-based methods have demonstrated unprecedented potential to automate...
Deep neural networks currently comprise the backbone of many applications where safety is a critical concern, for example: autonomous driving and medical diagnostics. Unfortunately these systems currently fail to detect out-of-distribution (OOD) inputs and can be prone to making dangerous errors when exposed to them. In addition, these same systems...
This thesis consists of two major components. The first part is concerned with video object instance segmentation (VOS), which is the task of assigning per-pixel labels perframe of a video sequence to indicate foreground object instance membership, given the first frame ground truth mask. VOS has myriad applications, from video...
I examined the relative roles of biotic and abiotic factors in structuring redband trout
Oncorhynchus mykiss distributions in the South Fork John Day. I first examined the
relationship between the biological traits of the fish assemblage and riparian-geomorphic features in context of prevailing theories of stream ecology stemming from the...
Ammonia (NH₃) volatilization can result in a substantial amount of surface applied nitrogen (N) being lost into the atmosphere, making it an environmental pollutant as well as reducing plant-available N. However, N can also be easily lost from the soil through leaching,
and nitrous oxide (NO₂). Enhanced efficiency N fertilizers...
Cyclic nitramines are a class of compounds that include most of the commonly used explosives today. These are among the most common toxicants released into the environment as a result of human activity, generated on military ranges, battlefields, and production sites. Of these, hexahydro-1,3,5-trinitro-1,3,5- triazine (RDX) is of particular interest,...
The causes of turbidity in impounded and released reservoir
water are studied. Seven Willamette Basin reservoirs are compared
to isolate watershed and reservoir characteristics which produce variations
in turbidity. Of the seven, Hills Creek Reservoir is examined
in detail. Particular features of the basin and impoundment are
studied to isolate...
A history of fire suppression, growth in the wildland-urban interface, and changing climate conditions, have created a fire regime in central Oregon that is growing in severity and intensity, putting more people and structures at risk and requiring a greater percentage of state and federal agency budgets to manage fires....
This research was conducted as part of the Strategic Highway Research Program (SHRP)
A-003A contract at Oregon State University to validate the findings of SHRP contracts
A-002A and A-003B with regard to aging of asphalt-aggregate mixtures. One short-term
and four long-term aging methods were used to simulate aging of asphalt-aggregate...
The immune systems of various teleost fish have been studied in some detail for
the past several decades. One aspect of fish immunity, that of endogenously produced
modulating factors, has recently received a great deal of attention. Understanding the
functions and roles of endogenous factors that regulate fish immunity is...
One of the classic problems in industrial engineering is the buffer allocation
problem. The objective of the buffer allocation problem is to maximize some line
output, typically throughput, through the allocation of buffers throughout the
production line. Previous work in this area has focused on either determining
general design rules...
Full Text:
AN ABSTRACT OF THE THESIS OF
Dan R. Staley for the degree of
The Salt Range and Potwar Plateau are part of the currently active
foreland fold-thrust belt of the Himalaya in Pakistan. Seismic reflection data have been combined with surface mapping, drillhole and
paleomagnetic information to construct balanced structural cross-sections of the current frontal thrust zone (Salt Range), and to estimate
the...
In 2004-2005, 2007 and 2009, three major drought disasters occurred in Guangdong
Province of southern China, which caused serious economic losses. Hence, it has recently become
an important research subject in China to monitor surface soil moisture (SSM) and the drought
disaster quickly and accurately. SSM is an effective indicator...
Longitudinal patterns of fish and benthic invertebrate distribution and
habitat use were similar in Thomas Creek, Oregon but clarity of these patterns
differed. I studied fish and aquatic invertebrates simultaneously, at multiple
scales, and used multivariate statistical techniques to compare responses to the
same environmental conditions. Both types of organisms...
The thesis focuses on the development of a novel printed resistive humidity sensor and integrated flexible electronics for an RFID-enabled humidity sensing platform. We explored a hybrid nanocomposite material for humidity sensing consisting of carbon nanomaterials, conductive polymer and cellulose polymer that undergoes resistance change in response to humidity change....
The purpose of this study was to understand the influence of organic material and nutrients from spawning salmon and supplemented salmon carcasses on stream food webs. My study objectives were to examine 1) assimilation of salmon-derived nutrients (SDN) by producers and consumers in the food web, 2) epilithic biofilm productivity,...
Over-winter growth of juvenile salmonids may be linked to ocean survival and thus species persistence. Diet, growth, and prey available to juvenile coho, Oncorhynchus kisutch, were examined from December 2004 to April 2005 in four tributaries of the West Fork Smith River (WFSR), Oregon. Juvenile coho growth rate and condition...
The dissertation focuses on the engineering of light-matter interaction using plasmonic nanoparticles and metamaterials to achieve enhanced luminescence and based on which to improve the performance of biosensing and light-emitting technologies. We designed and fabricated a spectrum of nanostructures to exhibit particular dispersion relations capable of controlling the spontaneous emission...
Chinook salmon (Oncorhynchus tshawytscha) have been absent from their historic spawning and rearing grounds in the Metolius River Basin in central Oregon since 1968, when fish passage was terminated at the Pelton Round Butte Hydroelectric Project on the Deschutes River. Plans have been developed to reestablish passage of anadromous fish...
Deep learning has recently revolutionized robot perception in many canonical robotic applications, such as autonomous driving. However, a similar transformation has yet to occur in more harsh environments including underwater and underground. This is due in part to the difficulty in deploying robots in these environments, which lack large real...
Marine ecosystems can be exposed to natural and anthropogenic disturbances that can lead to ecological failures. Marine reserves have been lately suggested to protect marine populations and communities that have been affected by habitat destruction and harvest. This research evaluates the potential role of two marine reserves established in Oregon...
The performance of deep learning frameworks could be significantly improved through considering the particular underlying structures for each dataset. In this thesis, I summarize our three work about boosting the performance of deep learning models through leveraging structures of the data. In the first work, we theoretically justify that, for...
Culture, thought worldview and language have been
discussed for a long time in different fields from various
perspectives. However, the basis of this study is the view
of language as both the product and producer of people just
as people are the producer and product of language. Each
language requires...
The current state of research on gossip techniques for wireless broadcasting is very limited because past research efforts have mostly focused on using gossip techniques for multicast communication. On the other hand, those research efforts that have focused on using gossip techniques for wireless broadcast communications ignore energy efficiency and...
The Machine Learning (ML) algorithms are increasingly explored in varies of fields including designing and optimizing computer systems. Recent research, such as optimizing memory/cache prefetching by ML training or predicting traffic pattern in throughput processors, also exhibits a promising future of introducing ML into computer system design and optimization. Throughput...
A characterization of the antigenic determinants (epitopes) of the glycoprotein (G) of infectious hematopoietic necrosis virus (IHNV) was made with different regions of the G gene expressed in Escherichia coli. A cDNA copy of the G gene was divided into four fragments after Taq I digestion and these fragments were...
This dissertation is about the likelihood analysis of ordered categorical responses in a longitudinal/spatial study, meaning regression-like analysis when the response variable is categorical with ordered categories, and is measured repeatedly over time or space on the experimental or sampling units. Particular attention is given to the multivariate ordinal probit...
Cell signaling under external stimulation is a critical mechanism that governs many biological processes such as cell proliferation, cell migration, and cell apoptosis, etc. For multicellular organisms, the ability to synchronize heterogeneous individual cellular responses through intercellular communication is crucial to maintain normal functionality. However, even though the biological pathways...
There is an emerging interest in developing wearable electronics as a platform, which
provides the flexibility of a wearable while maintaining its promising functionality as smart textiles. Metal-halide semiconductors are attractive materials with tunable optical and electrical properties. Researchers have widely studied and applied it for advanced
photonics and optoelectronic...
The radiation effects in III-V heterojunction devices are investigated in this thesis. Two types of heterojunction devices studied are InGaP/GaAs single heterojunction bipolar transistors (SHBTs) and GaN-based heterojunction light emitting diodes (LEDs). InGaP/GaAS HBTs are investigated for high energy (67 and 105 MeV) proton irradiation effects while GaN heterojunction LEDs...
Chitosan has been proposed as a "natural" coagulating agent to solve wastewater problems. The main hindrance in this commercial chitosan application has been its low cost effectiveness. The hypothesis in our research is that chitosan complexes with natural polyanions is more effective than chitosan alone, particularly in recovering low concentration...
Recent studies of headwater streams have demonstrated their importance to overall watershed biodiversity, nutrient cycling, and energy flux. However, little attention has been paid to long-term effects of forest harvest on macroinvertebrate communities in headwater streams. This study investigated headwater stream macroinvertebrate communities in the H.J. Andrews Experimental Forest, Oregon,...
This research was designed to broaden the understanding of how timber-harvest affects aquatic macroinvertebrates in perennial and intermittent headwater streams. This study compared emergent and benthic macroinvertebrate assemblages from 20 headwater streams in the central Oregon Coast Range that varied by harvest condition and flow duration. Through comparison of the...
Individual fishing quota (IFQ) systems are typically expected to increase the profitability of a fishery and improve sustainability by ensuring catches remain within quotas. They can also have important distributional and ecological implications that result from shifts in catch and effort between different gears, regions, and habitats. In multispecies fisheries...
As anthropogenic changes interact with natural climate cycles, the variability of marine ecosystems is likely to increase. This variability influences the behaviour of fishers, which can affect the profitability and sustainability of stocks and may have wider economic and ecological effects. We use data from the US West Coast salmon...