In order to better understand the relationships among current Nostocales cyanobacterial blooms, eight genomes were sequenced from cultured isolates or from environmental metagenomes of recent planktonic Nostocales blooms. Phylogenomic analysis of publicly available sequences placed the new genomes among a group of 15 genomes from four continents in a distinct...
Sediment convergence and divergence zones create subaqueous morphological features that range from ripples O (cm) to coastlines O (km). However, there is a gap in knowledge associated with quantifying the contribution of small-scale ripple mobility to the evolution of large-scale morphology. To address this gap, we investigate how small-scale ripples...
During the first full school year of the Covid-19 pandemic, two central contexts for adolescent development—home and school—changed utterly. In Oregon, most middle- and high schoolers attended school entirely remotely from the beginning of the pandemic, in March, 2020, through the end of April, 2021, removing both the supports available...
Introduction: A bone deficit is found to persist five years following a hip fracture and 10 years post tibial fracture in adults. We examined the effect of whole body vibration (Vib) as a means for enhancing whole body composition and bone recovery following hindlimb unloading (HU) of adult female rats....
The inhibition of mixed-function oxidase (MFO) activity by ethanol or acetaldehyde was examined in vivo by monitoring changes in salivary half-life of antipyrine or aminopyrine in adult male Sprague-Dawley rats. Ethanol (1-6 g/kg, po) or acetaldehyde (4-8 mmol/kg, ip) was administered 20 minutes prior to antipyrine (100 mg/kg, ip) or...
Discusses the development and evolution of the Bibliotherapy Evaluation Tool to help graduate counseling students use literature in therapy ethically and appropriately. A survey of bibliotherapeutic practice in the helping professions is provided. Graduate students showed greater knowledge of and comfort with bibliotherapy after exposure to a teaching module and...
We modeled patch occupancy to examine factors that best predicted the prevalence of four functionally important focal stream consumers (Tallaperla spp., Cambarus spp., Pleurocera proxima, and Cottus bairdi) among 37 reaches within the Little Tennessee River basin of the southern Appalachian Mountains, USA. We compared 34 models of patch occupancy...
The purpose of this study was to examine the general nature of attributions of Chinese parents in the U.S. regarding their preschool children's social behaviors. Eighty-seven parents with preschool children participated. The attributions were examined along three causal dimensions: locus of causality (internal versus external), stability (stable versus unstable), and...
Plagioclase ultraphyric basalts (PUBs) have been sampled along most mid-ocean ridges with
ultraslow to intermediate spreading rates. Over the past 40 years, the prevalent models for their origin
assume positive buoyancy of plagioclase in basaltic liquids resulting in selective concentration of
plagioclase phenocrysts by floatation. However, when the global population...
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fractionation, all of which can alter the
chemistry of the melt [Rubin et al., 2009]. Docu-
menting the glass
Background: Relative to heterosexual youth, sexual minority youth exhibit increased substance use. Risk for polysubstance use, which magnifies drug-related harms, remains largely unexamined for sexual minority youth. This investigation used a nationally-representative dataset to compare polysubstance use patterns between sexual minority and heterosexual youth.
Methods: The cross-sectional 2015 CDC's Youth...
Managing riparian areas in the dry forests of the intermountain west for diverse public values can create conflict, potentially limiting social acceptance in landscape-scale restoration projects. This thesis examined accelerated landscape-scale restoration as part of a broader shift toward ecosystem management on national forestland, which incorporates social values into forest...
The occurrence of two wildfires separated by 31 yr in the chaparral-dominated Arroyo Seco watershed (293 km²) of California provides a unique opportunity to evaluate the effects of wildfire on suspended-sediment yield. Here, we compile discharge and suspended-sediment sampling data from before and after the fires and show that the...
The study investigates the influence of the self-reference
effect upon the amount of main and subordinate ideas which older
adults can recall and recognize after viewing the television
documentary entitled, The Xinquana: Aborigines of South America.
The participants are native English-speaking Americans who are
50 years old or older. The...
Seamounts are a ubiquitous feature of the seafloor but relatively little is known about their internal structure. A seamount preserved in the Franciscan mélange of California suggests a sequence of formation common to all seamounts. Field mapping, geophysical measurements, and geochemical analyses are combined to interpret three stages of seamount...
The American Counseling Association's Code of Ethics states that counselors and
counselor trainees must be competent providers of multicultural counseling, able to practice
effectively with clients whose identities differ from their own. Counseling students and trainees
receive very little training around sexual orientation and how to work with clients who...
Prior to eruption at mid-ocean ridges, melts must travel through >6 km of crust from their origin in the mantle. The final composition of the melts is dependent on both the melting conditions and magmatic processes within the crust. While mid-ocean ridge basalt (MORB) glasses are commonly used to infer...
A recent and steady increase in student participation in study-abroad programs
has caused international educators and student affairs professionals to reevaluate the
current study-abroad paradigm and redesign and implement new curricula better suited
to meet the changing needs of international education. Recent emphasis has been
placed on understanding outcomes of...
Automated decision aids can improve human decision-making but the benefits are often compromised by inefficient use. The current experiment examined whether metacognition—the ability to assess self-performance—and numeracy—the ability to understand and work with numbers—predict the efficiency of automation use in a signal detection task. Two-hundred twenty-one participants classified random dot...
The deep-towed Argo I optical/acoustical vehicle and a geographic information system (GIS) have been used to establish the abundance, widths, and spatial distribution of fissures, as well as the relative age distribution of lavas along the narrow (<500 m wide) axial zone of the East Pacific Rise (EPR) from 9°12′...
A light and electron microscope study of Corylus avellana L.
vegetative buds infested with the eriophyoid mites, Cecidiophyopsis
vermiformis Nal. and Phycoptella avellanae Nal., is reported. Descriptions
are given of changes in infested stipule tissue. The
nipple-like proliferations (enations) which arise on the infested
stipule surface are covered by a...
Automated systems have become increasingly important to human decision making and task performance in a wide variety of complex fields and situations. Decision aids, a specific form of automation, assist human operators in making complex decisions under conditions of uncertainty, such as air traffic control or combat identification. When humans...
There is an increasing body of evidence that the pineal gland acts
as a neuroendocrine transducer, translating neural information about
environmental lighting condition into hormonal information. In the
rat, light controls the production of melatonin which acts via the
hypothalamic-hypophyseal pathway to control the function of the gonads,
A similar...
Axial Seamount, an active submarine volcano on the Juan de Fuca Ridge at 46°N, 130°W, erupted in
January 1998 along 11 km of its upper south rift zone. We use ship-based multibeam sonar, high-resolution
(1 m) bathymetry, sidescan sonar imagery, and submersible dive observations to map four
separate 1998 lava...
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[Haymon et al., 1993; Rubin et al., 1994; Soule
et al., 2009; Fundis et al., 2010]). This paper will
A new functional gene database, FOAM (Functional
Ontology Assignments for Metagenomes), was developed
to screen environmental metagenomic sequence
datasets. FOAM provides a new functional
ontology dedicated to classify gene functions relevant
to environmental microorganisms based on Hidden
Markov Models (HMMs). Sets of aligned protein
sequences (i.e. ‘profiles’) were tailored to...
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,R., Waldrop,M.P., DeAngelis,K.M., David,M.M.,
Chavarria,K.L., Blazewicz,S.J., Rubin,E.M. and Jansson
Data structures are more easily understood when they are presented visually rather than textually. We have developed a system, Calypso, to allow the visual definition of data structures programs using pictorial pattern/action pairs in an imperative setting. We present several examples including rebalancing an AVL tree and sorting an array...
Data structures are more easily understood when
they are presented visually rather than textually. We have
developed a system, Calypso, to allow the visual
definition of data structures programs using pictorial
pattern/action pairs in an imperative setting. We present
several examples including rebalancing an AVL tree and
sorting an array...
Jurassic rocks exposed in the Buckskin Range of the Yerington district,
represent the upper 1 to 2 km of a large magmatic-hydrothermal system with
porphyry copper deposits at 1-4 km depth. These rocks include, from deep to
shallow, the Yerington batholith, the Artesia Lake Volcanics (intruded by the
batholith), and...
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sensing research (Hudson, 1983; Rubin, 1991;
Dilles and Einaudi, 1992). The magmatic and hydrothermal
The purpose of this research was to explore patients' perceptions of services provided by hospital dietitians. The two-phase study included: (1) personal interviews of thirty-one patients to determine service attributes believed important when receiving a dietitian's service, and (2) development of a survey instrument, NUTRI-SERVE. Responses were obtained from 103...
Since nucleic acids were first extracted directly from the environment and sequenced, metagenomics has grown to one of the most data-rich and pervasive techniques for understanding the taxonomic and functional diversity of microbial communities. In the last decade, cheaper sequencing has democratized the application of metagenomics and generated billions of...
The morphology, genesis, and classification of soils
forming in multiple tephra deposits of recent age from
Mt. St. Helens volcano in southwestern Washington Cascade
Mountains was studied.
Soils which occupied well drained and poorly drained
positions on the landscape were characterized according
to their morphology and the results of analyses...
Resilient water, food, and energy management strategies for an ever-growing population and changing environment depends on our understanding of water and carbon cycles from local to global scales. Fluxes of water and carbon are coupled by photosynthesis and plant transpiration cycles the largest fraction of terrestrial water from the land...
Early child care and education programs have the potential to play a supportive role in the lives of vulnerable children and families involved in the child welfare system. Child care subsidies can help low-income families to access these programs. The current study examines the use and stability of child care...
Releasing hatchery reared salmon and steelhead to supplement threatened and endangered populations is a widely used conservation tool. One issue with this strategy is hatchery fish have lower reproductive fitness than wild fish when spawning in the wild. One of the drivers of fitness loss in steelhead is adaptation to...
Most pathogen detection tests are imperfect, with a sensitivity < 100%, thereby resulting in the potential for a false negative, where a pathogen is present but not detected. False negatives in a sample inflate the number of non-detections, negatively biasing estimates of pathogen prevalence. Histological examination of tissues as a...
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. salmoninarum to mini-
mize autocorrelation in the MCMC. The Gelman-Rubin convergence statistic and visual in
microRNAs (miRNAs) have emerged as regulators of a broad spectrum of neurodevelopmental processes, including brain morphogenesis, neuronal differentiation, and survival. While the role of miRNAs in establishing and maintaining the developing nervous system is widely appreciated, the developmental neurobehavioral role of miRNAs has yet to be defined. Here we show...
Calcium concentration and its regulation was examined in
tissues of larval Rana catesbiana. Considerable variability was
found in tissue calcium that could not be explained by stage of development.
A seasonal effect was observed, with plasma calcium decreasing
and muscle calcium increasing during winter. Total plasma
calcium concentration reflects, within...
Organellar DNA sequences are widely used in evolutionary and population genetic studies, however, the conservative nature of chloroplast gene and genome evolution often limits phylogenetic resolution and statistical power. To gain maximal access to the historical record contained within chloroplast genomes, we have adapted multiplex sequencing-by-synthesis (MSBS) to simultaneously sequence...
Human alterations of landscapes take many forms, one of which is anthropogenic pollution. Mercury (Hg) is a complex contaminant because its uptake into the food web is not driven entirely by loading to the system; methylation is necessary to make Hg bioavailable and toxic to fish and wildlife. Because methylation...
The widespread fragmentation, channelization, and simplification of river ecosystems has had acute environmental impacts, including degradation of water quality and habitat and biodiversity loss (Vörösmarty et al., 2010). These concerns have incited an increased focus on reestablishing ecological and hydrogeomorphological functions and improving habitat that has been lost in riverine...
Multibeam (1 m resolution) and side scan data collected from an autonomous underwater vehicle, and
lava samples, radiocarbon-dated sediment cores, and observations of flow contacts collected by remotely
operated vehicle were combined to reconstruct the geologic history and flow emplacement processes on
Axial Seamount’s summit and upper rift zones. The...
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have
focused on Ar-Ar analyses [e.g., Clague et al.,
2009b], U-Th systematics [e.g., Rubin and
CLAGUE
In the eastern Qilian Shan, a flight of fluvial terraces developed along the Jinta River valley are deformed across the Nanying anticline. Four individual fluvial terraces are preserved at different elevations above the river, and higher terrace treads are draped by systematically thicker aeolian loess. Optically stimulated luminescence dating of...
Cryptococcus, a major cause of disseminated infections in immunocompromised patients, kills over 600,000 people per year
worldwide. Genes involved in the virulence of the meningitis-causing fungus are being characterized at an increasing rate, and to
date, at least 648 Cryptococcus gene names have been published. However, these data are scattered...
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Q, Bartlett K, Li W,
Wang X, Heitman J, Stajich JE, Fraser JA, Meyer W, Carter D, Schein
J
Average annual losses caused by geologic hazards in Oregon are difficult to determine, owing to incomplete and scattered data. Preliminary considerations, however, indicate that losses to landslides may total between $4 million and $40 million per year. As many as nine persons have been killed by one landslide in Oregon...
Bold, rocky headlands alternating with long curved beaches, sand spits, and bays -- these are the dominant landforms that make up the more than 40 miles of scenic coastline between Roads End and Tillamook Bay. With the exception of Cape Kiwanda, which is composed of sandstone, the headlands are made...