Experiments were conducted to determine both the influence of wood
moisture content on the fungitoxicity of methylisothiocyanate (MIT) to the
wood-decay fungus Poria carbonica, and the ability of gelatin to safely en-capsulate MIT for efficient treatment of wood products.
The fungitoxicity of MIT was studied by determining the product of...
Experiments investigated how the fumigant methylisothiocyanate
(MIT), Douglas-fir wood at various moisture contents (MC), and the
wood decay fungus Poria carbonica Overh., interacted to govern
overall fumigant effectiveness.
MIT decomposed in wood to form non-MIT residues at rates of
about 0.16%, 0.9%, and 1.6% of the total bound MIT per...
Alcoves in some river systems are cooler than the mainstem of the river and provide thermal refugia for aquatic species. An energy balance and sensitivity analysis on 3 alcoves in the Willamette River, Oregon indicate that alcove size and alcove flux determine the degree to which meteorological conditions affect the...
High concentrations of the fumigant methylisothiocyanate (MITC) will effectively control decay fungi in large wood structures, but the fungitoxicity of low MITC concentrations and the influence of wood moisture content (MC) on its performance are not well understood. The MC of Douglas-fir heartwood greatly influenced the susceptibility of the decay...
A closed-tube bioassay with Poria placenta was used to measure residual fungistatic vapors in wood fumigated with methylisothiocyanate (MIT). This bioassay showed an inverse linear relationship between fungal growth and the amount of MIT in the wood samples. For fumigated increment-core sections of unseasoned Douglas-fir heartwood (4.8 mm in diameter...
The influence of moisture content (MC) and conventional preservative treatment on methylisothiocyanate (MIT) sorption and diffusion were investigated in Douglas-fir wood. In wood at 0% MC, the ratio of equilibrium MIT adsorption to desorption concentrations was low (0.2), but it increased rapidly to about 0.94 above 18% MC. Partition coefficients...
We examined the spatial and temporal variability of stream carbon dioxide (CO₂) and the drivers of these variations in a headwater catchment. To examine temporal variation and drivers, we measured stream and hyporheic pCO₂ at high temporal resolution over 11 months in a 95.9-ha forested headwater catchment in the Western...
Understanding groundwater flow in faulted and fractured rock is an important frontier in the field of environmental remediation and in the management of water resources. One example of a site where this is particularly evident is the Santa Susana Field Laboratory (SSFL) in Ventura County, CA where environmental remediation activities...
A zeolite packed biofilter was retrofitted to a confined swine feeding operation in Eastern Washington, and evaluated for its ability to reduce the malodors from fan exhaust drawn from an internal under-slat manure storage pit. Ammonia (NH₃) was used as the representative constituent of swine waste malodor due to its...
A majority of eighteenth-century novels remain in regular print over two hundred years since their inception. Yet with the possible exception of Robinson Crusoe, they have largely fallen out of popularity, rarely appearing on "The Summer's Hottest Reading" lists or receiving celebrity endorsement. I consider Ian Watt's foundational study, The...
This study investigated carbon dynamics in the hyporheic zone of a steep, forested catchment in the Cascade Mountains of western Oregon, USA. Water samples were collected monthly from a headwater stream and well network during baseflow conditions from July to December 2013 and again in March 2014. We also sampled...
Streams and rivers play a critical role in global carbon (C) cycling by processing, storing, and transporting C. Headwater streams which make up more than 95% of the length of streams and rivers worldwide have disproportionate influence on fluvial C dynamics. The hyporheic zone (HZ) of headwater streams is a...
Groundwater nitrate contamination is a well-documented issue in the Southern Willamette Valley (SWV) of Oregon, as a Groundwater Management Area (GWMA) has recently been declared. As a GWMA, groundwater nitrate monitoring must occur until regional concentrations are below 7 mg/L NO3-N. However, the presence of temporal variability can make it...
The age, or residence time of water is a fundamental descriptor of catchment hydrology, revealing information about the storage, flow pathways and source of water in a single integrated measure. While there has been tremendous recent interest in residence time to characterize catchments, there are few studies that quantify residence...
The performance of multi-user workstations that access files
over a local area network is studied. Such file systems, called
distributed file systems, provide access of remote file systems with a
great degree of transparency. The main objectives are
To study the principles of distributed file systems. specifically
NFS from Sun...
An ASR metric and site rating index applied to over 120 municipal and agricultural locations across Oregon, combined with comparison to case study data from existing ASR sites, indicate that more than 50% of selected sites are hydrogeologically suitable for ASR. The ASR metric is a ratio of aquifer storage...
Headwater streams comprise nearly 90% of the total length of perennial channels in global catchments. They mineralize organic carbon entering from terrestrial systems, evade terrestrial carbon dioxide (CO₂ ), and generate and remove carbon through in-stream primary production and respiration. Despite their importance, headwater streams are often neglected in global...
This dissertation focuses on the role of ice sheets in the transition during the middle Pleistocene (-1.2 Ma) from 41-kyr glacial cycles to 100-kyr glacial cycles. This research evaluates the hypothesis that the middle Pleistocene transition (MPT) was related to the glacial erosion of a regolith mantle and the subsequent...
Stream chemistry studies conducted in the forested Watershed 1 of the HJ Andrews Experimental Forest show a contribution of CO2 from the hyporheic zone. Hyporheic CO₂ concentrations, measured as pCO₂, have a seasonal trend as well as a responsiveness to storm events. Concentrations are highest at the end of the...
Most general purpose protocols are found to suffer from
inefficiency in an Ethernet LAN environment when used for large
volume data transfer. This is especially true with the TCP/IP family
which was designed for a wide area network. This research work
presents a proof of this inefficiency and proposes a...
GEMS (Graphical Ethernet Monitoring System) is an
enhancement to the SU-PC/IP NETWATCH program, for the
graphical display and recording of computer network packets.
SU-PC/IP (Stanford University Personal Computer/Internet
Protocol) NETWATCH displays one line of information per
packet, including the packet type, IP addresses, packet
size, and protocol type, etc. This...
This dissertation concentrates on the controlling factors on the instability of the Laurentide Ice Sheet (LIS) and their effects on abrupt climate change. Northern Hemisphere climate fluctuated abruptly during the last deglaciation possibly related to variability in Atlantic meridional overturning circulation (AMOC) and reduced aerial extent of the LIS. Reductions...
We present a systems modeling approach to the development of a place-based ecohydrological model. The conceptual model is calibrated to a variety of existing observations, taken in watershed 10 (WS10) at the HJ Andrews Experimental Forest (HJA) in Oregon, USA, a long term ecological research (LTER) site with a long...
Despite more than two centuries of exploration, including more than six million deep wellbores with depths exceeding 40,000 feet in some parts of the world, our ability to constrain subsurface processes and properties remains limited. Characteristics of the subsurface vary and can be analyzed on a variety of spatial scales....
Two striking characteristics of human beings are the diversity of resources that we use to sustain our lives and the extent to which we engage in coordinated, collective efforts to obtain and consume these resources. Together, these two characteristics are the foundation of human subsistence patterns. In many remote Alaskan...
The importance of role-taking skills in the social development of
children has been well documented. Further, it has been shown that
children's development of role-taking skills is dependent upon the
quantity and quality of social interactions which require the
consideration of alternative perspectives. Given recent evidence of
the importance of...
Native America tribes and community members throughout Oregon have asserted a strong opposition to the fossil fuel industry’s attempt to expand railways, build pipelines, and construct refineries, holding facilities, and export terminals. Despite the limited presence of fossil fuel infrastructure in the state, however, the industry is actively pursuing permits...
Natural stream systems contain a variety of flow geometries which contain flow separation, turbulent shear layers, and recirculation zones. This work focuses on streams with dead zones. Characterized by slower flow and recirculation, dead zones are naturally occurring cutouts in stream banks. These dead zones play an important role in...
The relationship between carbon burial and sedimentation in reservoirs is unknown, exposing gaps in our fundamental understanding of the transport, processing, and deposition of sediment and organic matter in fluvial and lacustrine systems and contributing to uncertainty in our understanding of the net impact of dams to the global carbon...
This dissertation addresses the problem of semantic labeling of image pixels. In the course of our work, we considered different types of semantic labels, including object classes (e.g., car, person), 3D depth values (in the range 0 to 80 meters), and affordance classes (e.g., walkable, sittable). Semantic pixel labeling is...
This thesis addresses a fundamental computer vision problem, that of action recognition. The goal of action recognition is to recognize a class of human actions in a given video. Action recognition has a wide range of applications, including automated surveillance, sports video analysis, internet-based searches etc. The main challenge is...
The purpose of this research was to assess the use of the General
Educational Development Tests (GED) as an alternative high school
credential in Oregon. A study was conducted of 469 Oregon GED
recipients' and 646 private sector employers' perceptions of the GED.
Both quantitative and qualitative measurements were used...
Secure two-party computation (2PC) is the task of performing arbitrary calculations on secret inputs provided by two parties, while maintaining secrecy if at least one party is honest. 2PC has been applied to privacy-preserving record linkage and machine learning, in areas such as medicine where maintaining privacy is crucial. One...
Ectomycorrhizal fungi (EmF) form symbioses with trees. These symbioses profoundly influence forest ecology. Certain EmF form specialized profusions of hyphae, known as ectomycorrhizal fungal mats (mats) which are visible to the naked eye, alter forest soil biogeochemistry, substantially contribute to soil microbial biomass/respiration and support unique microbial communities. Piloderma and...
The Willamette Silt is a surficial geologic unit composed of successive Missoula Flood Deposits that underlies 3100 km2 (1200 mil) of arable land in the Willamette Valley of Oregon. The Willamette Silt protects the underlying regionally important Willamette
Aquifer from agricultural contamination while acting as a semi-confining unit and a...
Dam removal is increasingly viewed as a river restoration tool because dams affect so many aspects of river hydrology, geomorphology, and ecology; but removal also has impacts. When a dam is removed, sediment accumulated over a dam’s lifetime may be transported downstream; and the timing, fate and consequences of this...
Temperature is a key factor for salmonid health and is an important restoration metric on the Middle Fork of the John Day River in northeast Oregon. In the past century, dredge mining, deforestation, and overgrazing have degraded stream habitat and resulted in greater daytime stream temperatures in the region. Recent...
Life on Earth intimately depends on the function of countless proteins. For the majority of studied proteins, function absolutely depends on conformation (i.e. 3-dimensional shape in solution). The exact nature of how a protein goes from an unfolded linear polypeptide chain to an organized folded molecule is still not known,...
Fungi and Actinobacteria are essential actors in global biogeochemical cycles of carbon and nutrients, and have both been recently appreciated for their roles in marine ecosystems. However, the diversity and distribution of these ubiquitous, but low-abundance microbes in deep-sea habitats remains poorly understood, particularly in chemosynthetic habitats such as methane...
The ongoing worldwide loss of biodiversity has been described as a "biodiversity crisis," "the Anthropocene defaunation," and alternatively "an extinction spasm." More recently, many scientists have come to the conclusion that we are witnesses to Earth's sixth major mass extinction event, which has the potential to fundamentally alter basic ecological...
Contemporary environmental change encompasses massive biodiversity loss and
increasing numbers of emerging diseases worldwide. As part of a global biodiversity
crisis, amphibians are disappearing at unprecedented rates. Batrachochytrium
dendrobatidis is an emerging infectious pathogen prominently associated with many
declines. Chapter 1 reviews the past decade of research on this system...
Fungi play critical roles in ecosystem processes and interact with plant communities in mutualistic, pathogenic, and commensal ways. Fungal communities are thought to be influenced by both associated tree communities and soil properties. However, the relative importance of the biotic and abiotic drivers of soil fungal community structure and diversity...
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Frank Andrew Jones
Fungi play critical roles in ecosystem processes and interact with
Floodplain forests play many important roles in the fluvial processes and environments of large alluvial rivers, including acting as geomorphological influences and habitat for native fish during high flows. Many large, gravel-bed river systems have undergone substantial change in recent centuries, resulting in loss of forested area to agriculture, reduction...
Biogeochemical mechanisms employed by key organisms, or symbiotic associations of organisms, transform the function and structure of their environment through processes recognized as ecosystem engineering. This dissertation seeks to investigate organism-ecosystem interactions that serve globally significant ecological functions in marine systems and impact how systems respond to environmental change. Using...
My thesis explored the effects of and potential mediating mechanisms for an important environmental stressor, ultraviolet-B (UVB) radiation. UVB radiation has negative effects on organisms in both terrestrial and aquatic systems. I used meta-analysis to quantify the effects of UVB radiation on a diversity of aquatic organisms (Chapter 2). UVB...
Two separate studies on the distribution of gammarid amphipods in the bathyal and abyssal benthic environments demonstrated that different assemblages could be found at a single depth over distances on the order of 100 kilometers. These studies evaluated changes in the species composition and relative abundance of the amphipod assemblage...
Five Ultra light Fabric Reflux Tubes (UFRTs) were tested in a thermal vacuum chamber at the National Aeronautics and Space Administration's Johnson Space Center in September 1994. These test articles were design and fabricated by staff at the Pacific Northwest Laboratory, operated by Battelle Memorial Institute for the United States...