The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Many home users nowadays use various smart devices to improve the efficiency and convenience of their home environments. Trigger-action platforms such as “If-This-Then-That” (IFTTT) enable end users to connect different smart devices and services using simple apps to control these devices and automate the tasks (e.g., if the camera detects...
Continuous Improvement (CI) of academic computing programs is a main requirement of accreditation. Academic computing programs must have a well-documented CI plan in order to be granted accreditation. Based on the existing literature, we developed a comprehensive CI (or 360-CI) model consisting of 8 components: course, curriculum, administration, faculty, research,...
In 2013, NSF selected OSU as the lead institution to oversee the design and construction of three new Regional Class Research Vessels (RCRVs), a new class of research ship designed with advanced capabilities for next generation, interdisciplinary, oceanographic operations. The new RCRVs will increase efficiency and the ability to address...
Assessing AI systems is difficult. Humans rely on AI systems in increasing ways, both visible and invisible, meaning a variety of stakeholders need a variety of assessment tools (e.g., a professional auditor, a developer, and an end user all have different needs). We posit that it is possible to provide...
When contributing to a software system, developers need to understand the rationale for previous design decisions so that they can adhere to the system’s design. Not doing so can lead to erosion of the overall design quality of the system. However, discussions embedded in a large volume of communication on...
With the advent of Artificial Intelligence (AI) in every sphere of life in today's day and age, it has become increasingly important for non-AI experts to be able to comprehend the underlying logic of how AI systems work, assess them and find faults in these systems, particularly when they are...
In order to assist WAC/WID practitioners and science writing faculty in incorporating translingual perspectives in disciplinary writing instruction, this study extends translingualism to language practice in the sciences by conducting a corpus study of Al-Awamia, a Moroccan agronomic journal. Mapping rhetorically significant changes across abstracts authored in English, French, and...
Enabled by a rich ecosystem of Machine Learning (ML) libraries, programming using learned models, i.e., Software-2.0, has gained substantial adoption. However, we do not know what challenges developers encounter when they use ML libraries. With this knowledge gap, researchers miss opportunities to contribute to new research directions, tool builders do...
Seagrasses and coral reefs play important roles in nutrient cycling, coastal protection, and maintaining marine biodiversity. However, these coastal marine organisms are declining globally due to anthropogenic stressors, such as rising ocean temperatures, ocean acidification, and eutrophication. These organisms live in close association with their microbiomes, which can be beneficial...