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Cuesta-MarcosAlfonsoCropSoilScienceUSDABarleyCore.pdf

Creator:: Muñoz-Amatriaín, Maria, Cuesta-Marcos, Alfonso, Endelman, Jeffrey B., Hayes, Patrick M., and et al.
Abstract:: New sources of genetic diversity must be incorporated into plant breeding programs if they are to continue increasing grain yield and quality, and tolerance to abiotic and biotic stresses. Germplasm collections provide a source of genetic and phenotypic diversity, but characterization of these resources is required to increase their utility...
Full Text:: large germplasm collections. Citation: Muñoz-Amatriaı́n M, Cuesta-Marcos A, Endelman JB, Comadran J

Cuesta-MarcosAlfonsoCropSoilScienceUSDABarleyCore_SupportingInformation.zip

Creator:: Muñoz-Amatriaín, Maria, Cuesta-Marcos, Alfonso, Endelman, Jeffrey B., Hayes, Patrick M., and et al.
Abstract:: New sources of genetic diversity must be incorporated into plant breeding programs if they are to continue increasing grain yield and quality, and tolerance to abiotic and biotic stresses. Germplasm collections provide a source of genetic and phenotypic diversity, but characterization of these resources is required to increase their utility...

The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies

Creator:: Muñoz-Amatriaín, Maria, Cuesta-Marcos, Alfonso, Endelman, Jeffrey B., Bonman, John M., Comadran, Jordi, Bockelman, Harold E., Chao, Shiaoman, Russell, Joanne, Waugh, Robbie, Hayes, Patrick M., and Muehlbauer, Gary J.
Abstract:: New sources of genetic diversity must be incorporated into plant breeding programs if they are to continue increasing grain yield and quality, and tolerance to abiotic and biotic stresses. Germplasm collections provide a source of genetic and phenotypic diversity, but characterization of these resources is required to increase their utility...
Resource Type:: Article

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

Creator:: Muñoz‐Amatriaín, Maria, Lonardi, Stefano, Luo, MingCheng, Madishetty, Kavitha, Svensson, Jan T., Moscou, Matthew J., Wanamaker, Steve, Jiang, Tao, Kleinhofs, Andris, Muehlbauer, Gary J., Wise, Roger P., Stein, Nils, Ma, Yaqin, Rodriguez, Edmundo, Kudrna, Dave, Bhat, Prasanna R., Chao, Shiaoman, Condamine, Pascal, Heinen, Shane, Resnik, Josh, Wing, Rod, Witt, Heather N., Alpert, Matthew, Beccuti, Marco, Bozdag, Serdar, Cordero, Francesca, Mirebrahim, Hamid, Ounit, Rachid, Wu, Yonghui, You, Frank, Zheng, Jie, Simková, Hana, Dolezel, Jaroslav, Grimwood, Jane, Schmutz, Jeremy, Duma, Denisa, Altschmied, Lothar, Blake, Tom, Bregitzer, Phil, Cooper, Laurel, Dilbirligi, Muharrem, Falk, Anders, Feiz, Leila, Graner, Andreas, Gustafson, Perry, Hayes, Patrick M., Lemaux, Peggy, Mammadov, Jafar, and Close, Timothy J.
Abstract:: Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole-genome shotgun sequences with a physical and genetic framework. However, because only 6278 bacterial artificial chromosome...
Resource Type:: Article
Full Text:: -dense regions of the barley genome Muñoz‐Amatriaín, M., Lonardi, S., Luo, M., Madishetty, K., Svensson

PetryszakExpressionAtlasUpdateSupplement.pdf

Creator:: Petryszak, Robert, Keays, Maria, Tang, Y. Amy, Fonseca, Nuno A., Barrera, Elisabet, Burdett, Tony, Füllgrabe, Anja, Muñoz-Pomer Fuentes, Alfonso, Jupp, Simon, Koskinen, Satu, Mannion, Oliver, Huerta, Laura, Megy, Karine, Snow, Catherine, Williams, Eleanor, Barzine, Mitra, Hastings, Emma, Weisser, Hendrik, Wright, James, Jaiswal, Pankaj, Huber, Wolfgang, Choudhary, Jyoti, Parkinson, Helen E., and Brazma, Alvis
Abstract:: Expression Atlas (http://www.ebi.ac.uk/gxa) provides information about gene and protein expression in animal and plant samples of different cell types, organism parts, developmental stages, diseases and other conditions. It consists of selected microarray and RNA-sequencing studies from ArrayExpress, which have been manually curated, annotated with ontology terms, checked for high quality...
Full Text:: , animals and plants Robert Petryszak*,1, Maria Keays*, Y. Amy Tang*, Nuno A. Fonseca*, Elisabet Barrera

PetryszakExpressionAtlasUpdate.pdf

Creator:: Petryszak, Robert, Keays, Maria, Tang, Y. Amy, Fonseca, Nuno A., Barrera, Elisabet, Burdett, Tony, Füllgrabe, Anja, Muñoz-Pomer Fuentes, Alfonso, Jupp, Simon, Koskinen, Satu, Mannion, Oliver, Huerta, Laura, Megy, Karine, Snow, Catherine, Williams, Eleanor, Barzine, Mitra, Hastings, Emma, Weisser, Hendrik, Wright, James, Jaiswal, Pankaj, Huber, Wolfgang, Choudhary, Jyoti, Parkinson, Helen E., and Brazma, Alvis
Abstract:: Expression Atlas (http://www.ebi.ac.uk/gxa) provides information about gene and protein expression in animal and plant samples of different cell types, organism parts, developmental stages, diseases and other conditions. It consists of selected microarray and RNA-sequencing studies from ArrayExpress, which have been manually curated, annotated with ontology terms, checked for high quality...
Full Text:: database of gene and protein expression in humans, animals and plants Robert Petryszak1,*, Maria Keays1, Y

Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants

Creator:: Petryszak, Robert, Keays, Maria, Tang, Y. Amy, Fonseca, Nuno A., Barrera, Elisabet, Burdett, Tony, Füllgrabe, Anja, Muñoz-Pomer Fuentes, Alfonso, Jupp, Simon, Koskinen, Satu, Mannion, Oliver, Huerta, Laura, Megy, Karine, Snow, Catherine, Williams, Eleanor, Barzine, Mitra, Hastings, Emma, Weisser, Hendrik, Wright, James, Jaiswal, Pankaj, Huber, Wolfgang, Choudhary, Jyoti, Parkinson, Helen E., and Brazma, Alvis
Abstract:: Expression Atlas (http://www.ebi.ac.uk/gxa) provides information about gene and protein expression in animal and plant samples of different cell types, organism parts, developmental stages, diseases and other conditions. It consists of selected microarray and RNA-sequencing studies from ArrayExpress, which have been manually curated, annotated with ontology terms, checked for high quality...
Resource Type:: Article

BakerCScottFisheriesWildlifeMicrosatelliteMarkersReveal.pdf

Creator:: José Pérez-Alvarez, María, Olavarría, Carlos, Moraga, Rodrigo, Baker, C. Scott, Hamner, Rebecca M., and Poulin, Elie
Abstract:: Understanding genetic differentiation and speciation processes in marine species with high dispersal capabilities is challenging. The Chilean dolphin, Cephalorhynchus eutropia, is the only endemic cetacean of Chile and is found in two different coastal habitats: a northern habitat with exposed coastlines, bays and estuaries from Valparaíso (33°02' S) to Chiloé...
Full Text:: ARTICLE Microsatellite Markers Reveal Strong Genetic Structure in the Endemic Chilean Dolphin María José

Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming

Creator:: Benavente, Javiera N., Seeb, Lisa W., Seeb, James E., Arismendi, Ivan, Hernández, Cristián E., Gajardo, Gonzalo, Galleguillos, Ricardo, Cádiz, Maria I., Musleh, Selim S., and Gomez-Uchida, Daniel
Abstract:: Knowledge about the genetic underpinnings of invasions—a theme addressed by invasion genetics as a discipline—is still scarce amid well documented ecological impacts of non-native species on ecosystems of Patagonia in South America. One of the most invasive species in Patagonia’s freshwater systems and elsewhere is rainbow trout (Oncorhynchus mykiss). This...
Resource Type:: Article
Full Text:: , James E. Seeb2, Ivan Arismendi3, Cristián E. Hernández1, Gonzalo Gajardo4, Ricardo Galleguillos5, Maria

Defenses of Susceptible and Resistant Chinook Salmon (Onchorhynchus tshawytscha) Against the Myxozoan Parasite Ceratomyxa shasta

Creator:: Bjork, Sarah J., Zhang, Yong-An, Hurst, Charlene N., Alonso-Naveiro, Maria E., Alexander, Julie D., Sunyer, J. Oriol, and Bartholomew, Jerri L.
Abstract:: We investigated intra-specific variation in the response of salmon to infection with the myxozoan Ceratomyxa shasta by comparing the progress of parasite infection and measures of host immune response in susceptible and resistant Chinook salmon Oncorhynchus tshawytscha at days 12, 25 and 90 post exposure. There were no differences in...
Resource Type:: Article
Full Text:: , Charlene N. Hursta, Maria E. Alonso-Naveirod, Julie D. 5 Alexandera, J. Oriol Sunyerc and *Jerri L

ScholarsArchive@OSU

Cuesta-MarcosAlfonsoCropSoilScienceUSDABarleyCore.pdf

Cuesta-MarcosAlfonsoCropSoilScienceUSDABarleyCore_SupportingInformation.zip

The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

PetryszakExpressionAtlasUpdateSupplement.pdf

PetryszakExpressionAtlasUpdate.pdf

Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants

BakerCScottFisheriesWildlifeMicrosatelliteMarkersReveal.pdf

Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming

Defenses of Susceptible and Resistant Chinook Salmon (Onchorhynchus tshawytscha) Against the Myxozoan Parasite Ceratomyxa shasta

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