Modifications of an ocean model are described, as the objective for which the model was used changed to study the kinematics and dynamics of an eastern-boundary poleward undercurrent.
A carefully calibrated primitive-equation model from 41°N to 48°N is used to study the poleward undercurrent off the US west coast. Chapter 2 describes poleward flow over the slope from Eulerian and Lagrangian perspectives. The model is robust, in the sense of several characteristics being qualitatively consistent with observational and...
Statistical mechanics studies the probability that a system is in a certain state given one or more constraints which are usually fixed conserved quantities. It is a particularly useful and powerful approach for problems with a large number of degrees of freedom where a complete knowledge of the system is...
Regional ocean circulation along the Oregon coast is studied numerically for forcing fields derived from year 2005 and climatological-mean conditions. The primary object is to study directly the Lagrangian pathways by which fluid arrives in the Oregon upwelling zone. Roughly half of the upwelling fluid is found to arrive in...
Vertical transports of plankton, momentum, heat, and turbulence are modeled. A novel integration of high resolution turbulence and biophysical modeling is used to show the influence of a Kelvin-Helmholtz instability on the vertical migration of simple gyrotactic organisms. A viscous limit on mixing driven by shear turbulence is proposed. Large...
The vascular endothelium is a single cell layer that lines the lumen of the entire vasculature. It is the site of synthesis of nitric oxide (NO), a vasodilatory compound synthesized by endothelial nitric oxide synthase (eNOS). NO causes intracellular calcium sequestration of the vascular smooth muscle cells, relaxing and dilating...
Global environmental change is causing local extinctions of species. When species depend on one another, as in the mutualistic relationship between plants and pollinators, loss of one interaction partner may cause cascading effects within the community – such as additional extinctions and reduced pollination services. Network theory provides a way...
Human cathelicidin antimicrobial peptide (CAMP/LL-37) is a cationic antimicrobial peptide that is widely expressed by myeloid and epithelial cells at the human-environment interface. It possesses broad spectrum antimicrobial capacity against bacteria, fungi and viruses. In addition to its direct antimicrobial activity, CAMP/LL-37 also attracts and recruits monocytes, neutrophils and other...
In this dissertation, I present the results from three studies: (1) a phylogeny of Tenebrionoidea (Coleoptera) inferred from a seven-gene dataset derived from PCR and Sanger sequencing; (2) a phylogeny of Tenebrionidae, the largest family in Tenebrionoidea, inferred from a four-gene dataset also derived from PCR and Sanger sequencing; (3)...