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  • Biocuration of rice (Oryza sativa) transcription factor networks involved in abiotic stress response

    Creator:
    El-Husseini, Sarah
    Abstract:
    Rice (Oryza sativa) is a common crop found in various regions worldwide where it is considered a staple food. Though widespread, O. sativa plants' growth, development, and yield are affected by environmental/abiotic stresses including drought, salinity, flooding, cold, heat, etc. Particularly, salinity stress leads to dehydration, overwhelms potassium pumps, and...
    Resource Type:
    Honors College Thesis
    Full Text:
    _____________________________________________________________________ Pankaj Jaiswal, Committee Member, representing Department of Botany and Plant Pathology

  • Gene Structure and Expression of the Rice S-Domain Kinase (SD-RLK) Gene Subfamily

    Creator:
    Dikeman, Daemon
    Abstract:
    The S-domain subfamily of receptor-like kinases (SD-RLKs) in plants is poorly characterized and the majority of genes have unknown functions. The goal of this study was to study the expansion of rice (Oryza sativa) SD-RLK subfamily, and characterize gene and protein structure and expression of its members using publicly available...
    Resource Type:
    Honors College Thesis
    Full Text:
    _____________________________________________________________________ Pankaj Jaiswal, Committee Member, representing Botany and Plant Pathology

  • Engineering Student Perspectives of a New Required Programming Course

    Creator:
    Garcia Ramirez, Jessica
    Abstract:
    We present student perceptions of a new first-year engineering programming class that was designed by informed research practices. While the College of Engineering at Oregon State University saw a lot of major switching in the first year, there were not many students switching into computer science (CS). This could have...
    Resource Type:
    Masters Thesis

  • Effects of different storage conditions on seed quality of hemp (Cannabis sativa L.)

    Creator:
    Fuchs, Grace
    Abstract:
    Hemp (Cannabis sativa L.) is a versatile crop with a wide range of pharmaceutical, commercial, and industrial uses. There is a lack of research and published studies on the ideal storage conditions and their effects on seed quality for hemp. Understanding ideal hemp seed storage conditions would reduce unnecessary seed...
    Resource Type:
    Masters Thesis
    Full Text:
    Myers, Rory Mc Donnell, and Pankaj Jaiswal. A sincere thankfulness to Julia (Lok Yung) Sliker and

  • Alternating Between Amperometric Copper Detection and Potentiometric Calcium Detection on a Carbon-based Ion-selective Electrode

    Creator:
    Park, Suji
    Abstract:
    The unique capability of carbon-based ion-selective electrode (ISE) to perform highly sensitive anodic stripping voltammetry, while maintaining all the properties of an ISE, is demonstrated in terms of sensitivity, detection limit, response time and selectivity. Square wave anodic stripping voltammetry involves deposition and dissolution steps of metal ions, which means...
    Resource Type:
    Masters Thesis
    Full Text:
    like to thank all committee members, Dr. Marilyn Mackiewicz, Dr. Thomas Sharpton, and Dr. Pankaj

  • Creating High Throughput Low Cost Analysis of Different Labor-Intensive Repetitive Research Processes

    Creator:
    Sullivan, Christopher M.
    Abstract:
    Many research projects suffer from limited data causing poor statistical analysis or limited results. The movement to high throughput methods has been building for many years and cross many different disciplines. Lots of these methods start out using pathways that generate large amounts of data but have limited methods to...
    Resource Type:
    Masters Thesis

  • Germplasm design, gene discovery, and variety release: breeding barley for the Pacific Northwest

    Creator:
    Graebner, Ryan C.
    Abstract:
    This thesis consists of three manuscripts addressing separate components of barley breeding, plus an introduction and a conclusion summarizing the status of barley in the Pacific Northwest, plus the implications of the research presented in this thesis. In the first manuscript, a package written for the statistical software "R" that...
    Resource Type:
    Masters Thesis

  • Annotation of image segments with ontologies (AISO)

    Creator:
    Lingutla Venkata, Nikhil Tej
    Abstract:
    This M.S thesis presents an interactive software tool that I have developed in the course of the past two years. This interactive tool is called AISO. AISO is aimed at interactive image segmentation and annotation tool designed to allow users to segment an image – such as those produced with...
    Resource Type:
    Masters Thesis
    Full Text:
    express my sincere gratitude to my advisors Dr. Sinisa Todorovic, Dr. Pankaj Jaiswal, Dr. Christopher

  • Characterizing and Addressing Dataset Shift with Deep Learning

    Creator:
    Olson, Matthew L.
    Abstract:
    This dissertation delves into understanding, characterizing, and addressing dataset shift in deep learning, a pervasive issue for deployed machine learning systems. Integral aspects of the problem are examined: We start with the use of counterfactual explanations in order to characterize the behavior of deep reinforcement learning agents in visual input...
    Resource Type:
    Dissertation

  • Visualization of N-ary Relationships

    Creator:
    Qu, Botong
    Abstract:
    N-ary relationships, which relate N entities where N is not necessarily two, are omnipresent in real life. In this thesis, we develop a visualization technique for N-ary relationships. First, we propose a visual metaphor that utilizes vertices and polygons to represent entities and N-ary relationships. Based on this visual metaphor,...
    Resource Type:
    Dissertation
    Full Text:
    research work. I want to thank my other committee members, Pankaj Jaiswal, Amir Nayyeri, and Michael Scott