Assembly and genotyping of polyploid genomes poses many problems due to the complex nature of polyploid data, including the inability to determine allelic dosage and mixed inheritance patterns. This study was the first application of POLiMAPS genotyping on whole genome sequences without using cross information. In this study, whole genome...
Infrageneric classification in Ribes has previously relied on a few, often
conflicting, morphological markers, such as spines, glands, and inflorescence
morphology. Suggestions that hybridization drives the evolution of the genus have
not been tested using phylogenetic methods. To assess the validity of infrageneric
classifications and the importance of hybridization to...
Few plant mitochondrial genomes have been published to date
because of their structural complexity and difficulties in their physical
isolation. Plant mitochondrial genomes are known to have a high level
of heteroplasmy and can exist as several different circular or linear
strands. Sequencing additional mitochondrial genomes will help to
understand...
Plantago ovata Forssk. (Plantaginaceae) is a winter annual species which, in North America, inhabits desert and Mediterranean habitats of the southwest United States, northwest Mexico and the Channel Islands of California and Mexico. In the eastern hemisphere P. ovata inhabits desert regions ranging from the Canary Islands, across northern Africa...
Accurate taxonomy is essential to preservation and management of native
grasses. Four problems in fescue taxonomy were investigated: the identity of the
native fescue that dominates western Oregon and Washington prairies, the relationship
of native Festuca roemeri to closely related grasses, the status of F. howellii and F.
washingtonica, and...
The order Cornales (dogwoods) is the earliest diverging lineage within the most diverse group of flowering plants, the asterids (>80,000 species). Although molecular phylogenetics have significantly improved our understanding of cornalean systematics, early phylogenetic relationships remain uncertain due to an initial rapid radiation. The fossil record of Cornales is extensive...
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Aaron I. Liston
The order Cornales (dogwoods) is the earliest diverging lineage within the
North America, with over 400 species of Astragalus (Fabaceae), is one of three major centers of diversity, all of which comprise the majority of the nearly 1750 species of Astragalus worldwide. One of the most diverse species, Astragalus lentiginosus of Section Diphysi, is a polymorphic complex of over 40 varieties,...
Plastid DNA restriction site and rearrangement mutations were used to study phylogenetic relationships among hard pines (subgenus Pinus). Total genomic DNA was cut with 19 restriction enzymes, blotted, and then probed mostly with 80% of the Douglas-Fir (Pseudotsuga menziesii) chioroplast genome (cpDNA) {initial study, using only 6bp recognition enzymes}; or,...
The climate of the Pacific Northwest is in flux, and existing forest ecosystems are stressed and poised to shift in fundamental ways, with or without human intervention. This dissertation probes the nature of forest responses to environmental change through investigations of morphology and genetics of three species of alder co-occurring...
