In the thrust to shift away from fossil fuels towards renewable options, Ecuador produces African palm-based biodiesel, which is currently imported by the Unites States. An analysis of this specific interaction was done via personal contact with the industry in Ecuador and extensive literature review of the topic. The results...
Background: Functional annotations of large plant genome projects mostly provide information on gene function
and gene families based on the presence of protein domains and gene homology, but not necessarily in
association with gene expression or metabolic and regulatory networks. These additional annotations are necessary
to understand the physiology, development...
This dissertation investigates the problem of uncertainty in complex ecological models. The term "complex" is used to convey both the common and scientific meanings. Increasingly, ecological models have become complex because they are more complicated; ecological models are generally multi-variate and multi-leveled in structure. Many ecological models are complex because...
A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...
Gramene (http://www.gramene.org) is a curated
online resource for comparative functional
genomics in crops and model plant species, currently
hosting 27 fully and 10 partially sequenced
reference genomes in its build number 38. Its
strength derives from the application of a phylogenetic
framework for genome comparison and the
use of ontologies...
Full Text:
resources
Gramene 2013: comparative plant genomics resources
Monaco, M. K., Stein, J., Naithani, S., Wei
Gramene (http://www.gramene.org) is a curated
online resource for comparative functional
genomics in crops and model plant species, currently
hosting 27 fully and 10 partially sequenced
reference genomes in its build number 38. Its
strength derives from the application of a phylogenetic
framework for genome comparison and the
use of ontologies...
Full Text:
Zea mays B73 Gramene Monaco et al (2012)
SorghumCyc 1.1 Sorghum bicolor BTx623 Gramene
Gramene (http://www.gramene.org) is a curated
online resource for comparative functional
genomics in crops and model plant species, currently
hosting 27 fully and 10 partially sequenced
reference genomes in its build number 38. Its
strength derives from the application of a phylogenetic
framework for genome comparison and the
use of ontologies...
Because invasive annual grasses can strongly influence soil resource availability and disturbance regimes to favor their own
persistence, there is a great need to understand the interrelationships among invasive plant abundance, resource availability, and
desirable species prominence. These interrelationships were studied in two salt desert sites where the local abundance...
Little is known about how cultivation legacies affect the outcome of rehabilitation seedings in the Great Basin, even though both
frequently co-occur on the same lands. Similarly, there is little known about how these legacies affect native species re-establishment
into these seedings. We examined these legacy effects by comparing areas...
Multiplicative random cascades (MRCs) can parsimoniously generate highly intermittent patterns similar to those in rainfall. The elemental MRC model parameter is the cascade weight, which determines how rainfall at one scale is partitioned at the next smallest scale in the cascade. While it is known that the probability density of...