Molecular dynamics simulations, conventional and metadynamics, were performed to determine the interaction of model protein Gb1 over kaolinite (001), Na⁺-montmorillonite (001), Ca²⁺-montmorillonite (001), goethite (100), and Na⁺-birnessite (001) mineral surfaces. Gb1, a small (56 residue) protein with a well-characterized solution-state nuclear magnetic resonance (NMR) structure and having α-helix, 4-fold β-sheet,...
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of
variations in mineral surface composition and structure
Amity Andersen,*,1 Patrick N. Reardon
Molecular dynamics simulations, conventional and metadynamics, were performed to determine the interaction of model protein Gb1 over kaolinite (001), Na⁺-montmorillonite (001), Ca²⁺-montmorillonite (001), goethite (100), and Na⁺-birnessite (001) mineral surfaces. Gb1, a small (56 residue) protein with a well-characterized solution-state nuclear magnetic resonance (NMR) structure and having α-helix, 4-fold β-sheet,...
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Andersen,*,† Patrick N. Reardon,† Stephany S. Chacon,§ Nikolla P. Qafoku,‡ Nancy M. Washton,†
and Markus
Molecular dynamics simulations, conventional and metadynamics, were performed to determine the interaction of model protein Gb1 over kaolinite (001), Na⁺-montmorillonite (001), Ca²⁺-montmorillonite (001), goethite (100), and Na⁺-birnessite (001) mineral surfaces. Gb1, a small (56 residue) protein with a well-characterized solution-state nuclear magnetic resonance (NMR) structure and having α-helix, 4-fold β-sheet,...
The bacteria Myxococcus xanthus clusters into fruiting bodies in the absence of food. The movement of M. xanthus has three aspects: self-propulsion (run), change of direction due to collision (tumble), and Brownian fluctuations in movement. We propose a minimalist PDE model for the concentrations of left and right moving agents...
This dissertation examines the interaction of the linker histone with DNA and with nucleosomes. The first goal of the project was to characterize the interaction of the linker histone with DNA. Three factors previously reported to influence the linker histone's interaction with DNA were examined: ratio of linker histone to...
Expansion of the National Flood Insurance Program is
described in the context of a modification of Kates' Systems Model of
Human Adjustments to Natural Hazards for a small central Pennsylvania
town (1970 population=ll,O98) that became eligible for flood insurance
four months after experiencing five million dollars in flood damage
and...
Linden (Tilia spp.), a profusely flowering temperate tree that provides bees with vital pollen and nectar, has been associated with bumble bee (Bombus spp.) mortality in Europe and North America. Bee deaths have been attributed, with inadequate evidence, to toxicity from mannose in nectar or starvation due to low nectar...
The ability of plants and microorganisms to take up organic nitrogen in the form of free amino acids and oligopeptides has received increasing attention over the last two decades, yet the mechanisms for the formation of such compounds in soil environments remain poorly understood. We used Nuclear Magnetic Resonance (NMR)...
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:
implications for a mechanism to supply soil biota
with oligopeptides.
Patrick N. Reardon
b*
, Stephany S
The ability of plants and microorganisms to take up organic nitrogen in the form of free amino acids and oligopeptides has received increasing attention over the last two decades, yet the mechanisms for the formation of such compounds in soil environments remain poorly understood. We used Nuclear Magnetic Resonance (NMR)...
Full Text:
: Implications
for a Mechanism to Supply Soil Biota with Oligopeptides
Patrick N. Reardon,*,‡ Stephany S. Chacon