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FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca

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https://ir.library.oregonstate.edu/concern/articles/0v838234k

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  • FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on the Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition of new pathways, enzymes, reactions, compounds, and small molecules in the database. To date, FragariaCyc comprises 66 super-pathways, 488 unique pathways, 2348 metabolic reactions, 3507 enzymes, and 2134 compounds. In addition to searching and browsing FragariaCyc, researchers can compare pathways across various plant metabolic networks and analyze their data using Omics Viewer tool. We view FragariaCyc as a resource for the community of researchers working with strawberry and related fruit crops. It can help understanding the regulation of overall metabolism of strawberry plant during development and in response to diseases and abiotic stresses. FragariaCyc is available online at http://pathways.cgrb.oregonstate.edu.
  • KEYWORDS: plant pathway database, gene-expression analysis, strawberry, FragariaCyc, metabolic network, Fragaria vesca
  • This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Frontiers Media. The published article can be found at: http://journal.frontiersin.org/journal/plant-science
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  • Naithani, S., Partipilo, C. M., Raja, R., Elser, J. L., & Jaiswal, P. (2016). FragariaCyc: A metabolic pathway database for woodland strawberry Fragaria vesca. Frontiers in Plant Science, 7, 242. doi:10.3389/fpls.2016.00242
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  • 7
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  • This work was supported by the startup funds provided to SN and PJ by Oregon State University.
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file details NaithaniFragariaCycMetabolicPathway.pdf 07/26/2017 Público
file details NaithaniFragariaCycMetabolicPathwayTable1.xlsx 07/26/2017 Público
file details NaithaniFragariaCycMetabolicPathwayFigureS1.pdf 07/26/2017 Público