Gramene: a bird's eye view of cereal genomes

Jaiswal, Pankaj; Ni, Junjian; Yap, Immanuel; Ware, Doreen; Spooner, William; Youens-Clark, Ken; Canaran, Payan; Fogleman, Molly; Hebbard, Claire; Ren, Liya; Liang, Chengzhi; Zhao, Wei; Ratnapu, Kiran; Faga, Benjamin; Avraham, Shuly; Schmidt, Steven; Casstevens, Terry M.; Buckler, Edward S.; Stein, Lincoln; McCouch, Susan

Citeable URL: https://ir.library.oregonstate.edu/concern/articles/0z708x157

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Creator	Jaiswal, Pankaj Ni, Junjian Yap, Immanuel Ware, Doreen Spooner, William Youens-Clark, Ken Canaran, Payan Fogleman, Molly Hebbard, Claire Ren, Liya Liang, Chengzhi Zhao, Wei Ratnapu, Kiran Faga, Benjamin Avraham, Shuly Schmidt, Steven Casstevens, Terry M. Buckler, Edward S. Stein, Lincoln McCouch, Susan
Abstract	Rice, maize, sorghum, wheat, barley and the other major crop grasses from the family Poaceae (Gramineae) are mankind’s most important source of calories and contribute tens of billions of dollars annually to the world economy (FAO 1999, http://www.fao.org; USDA 1997, http://www.usda.gov). Continued improvement of Poaceae crops is necessary in order to continue to feed an ever-growing world population. However, of the major crop grasses, only rice (Oryza sativa), with a compact genome of ~400 Mbp, has been sequenced and annotated. The Gramene database (http://www.gramene.org) takes advantage of the known genetic colinearity (synteny) between rice and the major crop plant genomes to provide maize, sorghum, millet, wheat, oat and barley researchers with the benefits of an annotated genome years before their own species are sequenced. Gramene is a one stop portal for finding curated literature, genetic and genomic datasets related to maps, markers, genes, genomes and quantitative trait loci. The addition of several new tools to Gramene has greatly facilitated the potential for comparative analysis among the grasses and contributes to our understanding of the anatomy, development, environmental responses and the factors influencing agronomic performance of cereal crops. Since the last publication on Gramene database by D. H. Ware, P. Jaiswal, J. Ni, I. V. Yap, X. Pan, K. Y. Clark, L. Teytelman, S. C. Schmidt, W. Zhao, K.Changet al. [(2002), Plant Physiol., 130, 1606–1613], the database has undergone extensive changes that are described in this publication. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Oxford University Press. The published article can be found at: http://nar.oxfordjournals.org/.
Resource Type	Article
DOI	https://doi.org/10.1093/nar/gkj154
Date Available	2014-07-29T20:22:43+00:00
Date Issued	2006
Citation	Jaiswal, P., Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., ... & McCouch, S. (2006). Gramene: a bird's eye view of cereal genomes. Nucleic Acids Research, 34, D717-D723. doi:10.1093/nar/gkj154
Journal Title	Nucleic Acids Research
Journal Volume	34
Academic Affiliation	Botany and Plant Pathology
权利声明	Copyright Not Evaluated
Funding Statement (additional comments about funding)	This work is supported by the USDA Initiative for Future Agriculture and Food Systems (IFAFS) (grant no. 00-52100-9622) and USDA-Agricultural Research Service specific cooperative agreement (grant no. 58-1907-0-041). During 2004–2007 this work is also supported by the National Science Foundation (NSF) award no. 0321685 and USDA-ARS.Funding to pay the Open Access publication charges for this article was provided by NSF 0321685.
Publisher	Oxford University Press
Peer Reviewed	Yes
Language	English [eng]
Replaces	http://hdl.handle.net/1957/50887

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