Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress Public Deposited

http://ir.library.oregonstate.edu/concern/articles/1v53jz759

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  • Brachypodium distachyon is a close relative of many important cereal crops. Abiotic stress tolerance has a significant impact on productivity of agriculturally important food and feedstock crops. Analysis of the transcriptome of Brachypodium after chilling, high-salinity, drought, and heat stresses revealed diverse differential expression of many transcripts. Weighted Gene Co-Expression Network Analysis revealed 22 distinct gene modules with specific profiles of expression under each stress. Promoter analysis implicated short DNA sequences directly upstream of module members in the regulation of 21 of 22 modules. Functional analysis of module members revealed enrichment in functional terms for 10 of 22 network modules. Analysis of condition-specific correlations between differentially expressed gene pairs revealed extensive plasticity in the expression relationships of gene pairs. Photosynthesis, cell cycle, and cell wall expression modules were down-regulated by all abiotic stresses. Modules which were up-regulated by each abiotic stress fell into diverse and unique gene ontology GO categories. This study provides genomics resources and improves our understanding of abiotic stress responses of Brachypodium.
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  • Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, et al. (2014) Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress. PLoS ONE 9(1): e87499. doi:10.1371/journal.pone.0087499
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  • description.provenance : Approved for entry into archive by Erin Clark(erin.clark@oregonstate.edu) on 2014-04-09T17:46:19Z (GMT) No. of bitstreams: 3 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) FoxSamuelBotanyPlantPathologyAnalysisGlobalGene.pdf: 1157674 bytes, checksum: 717ceddee2bfa0bc29473c2b340baa9d (MD5) FoxSamuelBotanyPlantPathologyAnalysisGlobalGene_SupportingInformation.zip: 558386 bytes, checksum: 34ada8f2cbc7bed08343d00ff3c1b5af (MD5)
  • description.provenance : Made available in DSpace on 2014-04-09T17:46:19Z (GMT). No. of bitstreams: 3 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) FoxSamuelBotanyPlantPathologyAnalysisGlobalGene.pdf: 1157674 bytes, checksum: 717ceddee2bfa0bc29473c2b340baa9d (MD5) FoxSamuelBotanyPlantPathologyAnalysisGlobalGene_SupportingInformation.zip: 558386 bytes, checksum: 34ada8f2cbc7bed08343d00ff3c1b5af (MD5) Previous issue date: 2014-01-29
  • description.provenance : Submitted by Erin Clark (erin.clark@oregonstate.edu) on 2014-04-09T17:46:01Z No. of bitstreams: 3 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) FoxSamuelBotanyPlantPathologyAnalysisGlobalGene.pdf: 1157674 bytes, checksum: 717ceddee2bfa0bc29473c2b340baa9d (MD5) FoxSamuelBotanyPlantPathologyAnalysisGlobalGene_SupportingInformation.zip: 558386 bytes, checksum: 34ada8f2cbc7bed08343d00ff3c1b5af (MD5)

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