Article

 

ThurberRebeccaMicrobiologyTwoDistinctMicrobial.pdf Public Deposited

Downloadable Content

Download PDF
https://ir.library.oregonstate.edu/concern/articles/2b88qf07x

Descriptions

Attribute NameValues
Creator
Abstract
  • Marine sponges are vital components of benthic and coral reef ecosystems, providing shelter and nutrition for many organisms. In addition, sponges act as an essential carbon and nutrient link between the pelagic and benthic environment by filtering large quantities of seawater. Many sponge species harbor a diverse microbial community (including Archaea, Bacteria and Eukaryotes), which can constitute up to 50% of the sponge biomass. Sponges of the genus Cinachyrella are common in Caribbean and Floridian reefs and their archaeal and bacterial microbiomes were explored here using 16S rRNA gene tag pyrosequencing. Cinachyrella specimens and seawater samples were collected from the same South Florida reef at two different times of year. In total, 639 OTUs (12 archaeal and 627 bacterial) belonging to 2 archaeal and 21 bacterial phyla were detected in the sponges. Based on their microbiomes, the six sponge samples formed two distinct groups, namely sponge group 1 (SG1) with lower diversity (Shannon-Wiener index: 3.73 ± 0.22) and SG2 with higher diversity (Shannon-Wiener index: 5.95 ± 0.25). Hosts’ 28S rRNA gene sequences further confirmed that the sponge specimens were composed of two taxa closely related to Cinachyrella kuekenthalli. Both sponge groups were dominated by Proteobacteria, but Alphaproteobacteria were significantly more abundant in SG1. SG2 harbored many bacterial phyla (>1% of sequences) present in low abundance or below detection limits (<0.07%) in SG1 including: Acidobacteria, Chloroflexi, Gemmatimonadetes, Nitrospirae, PAUC34f, Poribacteria, and Verrucomicrobia. Furthermore, SG1 and SG2 only had 95 OTUs in common, representing 30.5 and 22.4% of SG1 and SG2’s total OTUs, respectively. These results suggest that the sponge host may exert a pivotal influence on the nature and structure of the microbial community and may only be marginally affected by external environment parameters.
Keyword
Rights Statement
Additional Information
  • description.provenance : Approved for entry into archive by Erin Clark(erin.clark@oregonstate.edu) on 2015-01-29T00:18:26Z (GMT) No. of bitstreams: 3 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) ThurberRebeccaMicrobiologyTwoDistinctMicrobial.pdf: 1630450 bytes, checksum: 91989b162ad395832c7e41ffb45b5ea5 (MD5) ThurberRebeccaMicrobiologyTwoDistinctMicrobial_SupplementaryMaterials.zip: 1460392 bytes, checksum: a3f5aedaeca7f4d308fca3e9a698c107 (MD5)
  • description.provenance : Made available in DSpace on 2015-01-29T00:18:26Z (GMT). No. of bitstreams: 3 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) ThurberRebeccaMicrobiologyTwoDistinctMicrobial.pdf: 1630450 bytes, checksum: 91989b162ad395832c7e41ffb45b5ea5 (MD5) ThurberRebeccaMicrobiologyTwoDistinctMicrobial_SupplementaryMaterials.zip: 1460392 bytes, checksum: a3f5aedaeca7f4d308fca3e9a698c107 (MD5) Previous issue date: 2014-11-04
  • description.provenance : Submitted by Erin Clark (erin.clark@oregonstate.edu) on 2015-01-29T00:18:12Z No. of bitstreams: 3 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) ThurberRebeccaMicrobiologyTwoDistinctMicrobial.pdf: 1630450 bytes, checksum: 91989b162ad395832c7e41ffb45b5ea5 (MD5) ThurberRebeccaMicrobiologyTwoDistinctMicrobial_SupplementaryMaterials.zip: 1460392 bytes, checksum: a3f5aedaeca7f4d308fca3e9a698c107 (MD5)

Relationships

Parents:

Items