A single generation of domestication heritably alters the expression of hundreds of genes Public Deposited

http://ir.library.oregonstate.edu/concern/articles/6395w8935

This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Nature Publishing Group. The published article can be found at:  http://www.nature.com/ncomms/2016/160217/ncomms10676/full/ncomms10676.html#supplementary-information

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  • The genetic underpinnings associated with the earliest stages of plant and animal domestication have remained elusive. Because a genome-wide response to selection can take many generations, the earliest detectable changes associated with domestication may first manifest as heritable changes to global patterns of gene expression. Here, to test this hypothesis, we measured differential gene expression in the offspring of wild and first-generation hatchery steelhead trout (Oncorhynchus mykiss) reared in a common environment. Remarkably, we find that there were 723 genes differentially expressed between the two groups of offspring. Reciprocal crosses reveal that the differentially expressed genes could not be explained by maternal effects or by chance differences in the background levels of gene expression among unrelated families. Gene-enrichment analyses reveal that adaptation to the novel hatchery environment involved responses in wound healing, immunity and metabolism. These findings suggest that the earliest stages of domestication may involve adaptation to highly crowded conditions.
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  • Christie, M. R., Marine, M. L., Fox, S. E., French, R. A., & Blouin, M. S. (2016). A single generation of domestication heritably alters the expression of hundreds of genes. Nature Communications, 7, 10676. doi:10.1038/ncomms10676
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  • description.provenance : Made available in DSpace on 2016-04-05T17:27:57Z (GMT). No. of bitstreams: 7 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) ChristieSingleGenerationDomestication.pdf: 332365 bytes, checksum: b278e4558189e64109fa4bab46b07757 (MD5) ChristieSingleGenerationDomesticationSupplementaryInformation.pdf: 682491 bytes, checksum: 753f23028c5f33cc721666bdccafc019 (MD5) ChristieSingleGenerationDomesticationSupplementaryData1.pdf: 641645 bytes, checksum: 191ce830f4d864c29b21307a782de39c (MD5) ChristieSingleGenerationDomesticationSupplementaryData2.xlsx: 57753 bytes, checksum: 177f3f641b995350c89861a70f6a9549 (MD5) ChristieSingleGenerationDomesticationSupplementaryData3.pdf: 1084137 bytes, checksum: e26dbe91b74102b610ee821a5c5117bf (MD5) ChristieSingleGenerationDomesticationSupplementarySoftware1.pdf: 23292 bytes, checksum: 316b6f4dc654f722fc4f2023db187633 (MD5) Previous issue date: 2016-02
  • description.provenance : Approved for entry into archive by Patricia Black(patricia.black@oregonstate.edu) on 2016-04-05T17:27:57Z (GMT) No. of bitstreams: 7 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) ChristieSingleGenerationDomestication.pdf: 332365 bytes, checksum: b278e4558189e64109fa4bab46b07757 (MD5) ChristieSingleGenerationDomesticationSupplementaryInformation.pdf: 682491 bytes, checksum: 753f23028c5f33cc721666bdccafc019 (MD5) ChristieSingleGenerationDomesticationSupplementaryData1.pdf: 641645 bytes, checksum: 191ce830f4d864c29b21307a782de39c (MD5) ChristieSingleGenerationDomesticationSupplementaryData2.xlsx: 57753 bytes, checksum: 177f3f641b995350c89861a70f6a9549 (MD5) ChristieSingleGenerationDomesticationSupplementaryData3.pdf: 1084137 bytes, checksum: e26dbe91b74102b610ee821a5c5117bf (MD5) ChristieSingleGenerationDomesticationSupplementarySoftware1.pdf: 23292 bytes, checksum: 316b6f4dc654f722fc4f2023db187633 (MD5)
  • description.provenance : Submitted by Patricia Black (patricia.black@oregonstate.edu) on 2016-04-05T17:27:35Z No. of bitstreams: 7 license_rdf: 1370 bytes, checksum: cd1af5ab51bcc7a5280cf305303530e9 (MD5) ChristieSingleGenerationDomestication.pdf: 332365 bytes, checksum: b278e4558189e64109fa4bab46b07757 (MD5) ChristieSingleGenerationDomesticationSupplementaryInformation.pdf: 682491 bytes, checksum: 753f23028c5f33cc721666bdccafc019 (MD5) ChristieSingleGenerationDomesticationSupplementaryData1.pdf: 641645 bytes, checksum: 191ce830f4d864c29b21307a782de39c (MD5) ChristieSingleGenerationDomesticationSupplementaryData2.xlsx: 57753 bytes, checksum: 177f3f641b995350c89861a70f6a9549 (MD5) ChristieSingleGenerationDomesticationSupplementaryData3.pdf: 1084137 bytes, checksum: e26dbe91b74102b610ee821a5c5117bf (MD5) ChristieSingleGenerationDomesticationSupplementarySoftware1.pdf: 23292 bytes, checksum: 316b6f4dc654f722fc4f2023db187633 (MD5)

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