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QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice

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  • The QlicRice database is designed to host publicly accessible, abiotic stress responsive quantitative trait loci (QTLs) in rice (Oryza sativa) and their corresponding sequenced gene loci. It provides a platform for the data mining of abiotic stress responsive QTLs, as well as browsing and annotating associated traits, their location on a sequenced genome, mapped expressed sequence tags (ESTs) and tissue and growth stage-specific expressions on the whole genome. Information on QTLs related to abiotic stresses and their corresponding loci from a genomic perspective has not yet been integrated on an accessible, user-friendly platform. QlicRice offers client-responsive architecture to retrieve meaningful biological information-integrated and named 'Qlic Search'-embedded in a query phrase autocomplete feature, coupled with multiple search options that include trait names, genes and QTL IDs. A comprehensive physical and genetic map and vital statistics have been provided in a graphical manner for deciphering the position of QTLs on different chromosomes. A convenient and intuitive user interface have been designed to help users retrieve associations to agronomically important QTLs on abiotic stress response in rice. Database URL: http://nabg.iasri.res.in:8080/qlic-rice/.
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  • Smita, S., Lenka, S. K., Katiyar, A., Jaiswal, P., Preece, J., & Bansal, K. C. (2011). QlicRice: A web interface for abiotic stress responsive QTL and loci interaction channels in rice. Database : The Journal of Biological Databases and Curation, 2011, bar037. doi: 10.1093/database/bar037
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  • 2011
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