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The genome of Eucalyptus grandis Public Deposited

https://ir.library.oregonstate.edu/concern/articles/bz60cz39s

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  • Eucalypts are the world’s most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest proportion thus far in plant genomes. Eucalyptus also shows the highest diversity of genes for specialized metabolites such as terpenes that act as chemical defence and provide unique pharmaceutical oils. Genome sequencing of the E. grandis sister species E. globulus and a set of inbred E. grandis tree genomes reveals dynamic genome evolution and hotspots of inbreeding depression. The E. grandis genome is the first reference for the eudicot order Myrtales and is placed here sister to the eurosids. This resource expands our understanding of the unique biology of large woody perennials and provides a powerful tool to accelerate comparative biology, breeding and biotechnology.
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  • Myburg, A. A., Grattapaglia, D., Tuskan, G. A., Hellsten, U., Hayes, R. D., Grimwood, J., ... & Schmutz, J. (2014). The genome of Eucalyptus grandis. Nature, 510(7505), 356-362. doi:10.1038/nature13308
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  • The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of the US Department of Energy under Contract No. DE-AC02-05CH11231. The research and writing of the manuscript was supported, in part, by the Office of Biological and Environmental Research in the US Department of Energy Office of Science under contract DE-AC05-00OR22725 as part of the US DOE Bioenergy Center. Funding for additional components of the study was provided by the Brazilian Ministry of Science, Technology and Innovation (MCTI) through its research funding agencies (CNPq and FINEP), the Brazilian Federal District Research Foundation (FAP-DF), the public-private Genolyptus network of Brazilian forestry companies, the Tree Biosafety and Genomics Research Cooperative (TBGRC, Oregon State University), South African forestry companies Sappi and Mondi, the Technology and Human Resources for Industry Programme (THRIP, UID 80118), the South African Department of Science and Technology (DST) and National Research Foundation (NRF, UID 18312 and 86936), the Laboratoire d’Excellence (LABEX TULIP ANR-10-LABX-41), the Agence Nationale pour la Recherche (Project Tree For Joules ANR-2010-KBBE-007-01; Fundação para a Ciência e Tecnologia (FCT, P-KBBE/AGR_GPL/0001/2010), the Centre National pour la Recherche Scientifique (CNRS), the University Paul Sabatier Toulouse III (UPS). Part of this work was carried out using the Stevin Supercomputer Infrastructure at Ghent University, funded by Ghent University, the Hercules Foundation, and the Flemish Government–department EWI.
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  • description.provenance : Made available in DSpace on 2014-07-15T18:54:46Z (GMT). No. of bitstreams: 3 license_rdf: 1536 bytes, checksum: df76b173e7954a20718100d078b240a8 (MD5) ViningKellyForestryGenomeEucalyptusGrandis.pdf: 8497669 bytes, checksum: ae160c1f2b7a0c753abb818e153451dc (MD5) ViningKellyForestryGenomeEucalyptusGrandis_SupplementaryInformation.zip: 49613506 bytes, checksum: 0febdc08046a0ff98a7661696d660c12 (MD5) Previous issue date: 2014-06-19
  • description.provenance : Submitted by Erin Clark (erin.clark@oregonstate.edu) on 2014-07-15T18:54:31Z No. of bitstreams: 3 license_rdf: 1536 bytes, checksum: df76b173e7954a20718100d078b240a8 (MD5) ViningKellyForestryGenomeEucalyptusGrandis.pdf: 8497669 bytes, checksum: ae160c1f2b7a0c753abb818e153451dc (MD5) ViningKellyForestryGenomeEucalyptusGrandis_SupplementaryInformation.zip: 49613506 bytes, checksum: 0febdc08046a0ff98a7661696d660c12 (MD5)
  • description.provenance : Approved for entry into archive by Erin Clark(erin.clark@oregonstate.edu) on 2014-07-15T18:54:46Z (GMT) No. of bitstreams: 3 license_rdf: 1536 bytes, checksum: df76b173e7954a20718100d078b240a8 (MD5) ViningKellyForestryGenomeEucalyptusGrandis.pdf: 8497669 bytes, checksum: ae160c1f2b7a0c753abb818e153451dc (MD5) ViningKellyForestryGenomeEucalyptusGrandis_SupplementaryInformation.zip: 49613506 bytes, checksum: 0febdc08046a0ff98a7661696d660c12 (MD5)

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