Updates_supplementalTable.csv

Dataset

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Citeable URL: https://ir.library.oregonstate.edu/concern/datasets/1544bv06w

Descriptions

Attribute Name	Values
Creator	Burkhardt, Alyssa Buchanan, Alex Cumbie, Jason S. Savory, Elizabeth, A. Chang, Jeff H. Day, Brad
Abstract	We re-sequenced the Pseudoperonospora cubensis transcriptome to provide the first extensive transcriptome-wide survey of alternative splicing in an obligate biotrophic pathogen during host infection. The libraries from biological replicates of cucumber leaves infected with Ps. cubensis for 2, 3, 4, and 8 days post inoculation (dpi) were re-sequenced using 100-mer paired-end (PE) sequencing on four channels of an Illumina HiSeq. As a first step in the characterization of alternative splicing, we used the RNA-Seq reads to reannotate the Ps. cubensis genome, which is deposited as a gff file, along with a relational table that associates the most current annotation to the previous Ps. cubensis annotation.
License	Attribution 4.0 (CC BY 4.0)
Resource Type	Dataset
DOI	https://doi.org/10.7267/1544bv06w
Keyword	RNA-Seq oomycete genome annotation
Rights Statement	No Copyright - United States
Related Items	See related paper: "Burkhardt, Alyssa, Alex Buchanan, Jason S Cumbie, Elizabeth A Savory, Jeff Chang, and Brad Day (2014) Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen, Pseudoperonospora Cubensis. Molecular Plant-Microbe Interactions [issue forthcoming] Article: Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis
Accessibility Feature	unknown

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