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Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics

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https://ir.library.oregonstate.edu/concern/datasets/2r36v416r

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Abstract
  • Cytochrome B sequence data (FASTA format) from the paper “Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics”. The data was generated from a sample of 2534 unknown, field collected late-larval and juvenile rockfishes from the Pacific Ocean off Oregon and Washington. These unknowns identified by comparison with a data set of sequences generated from known (morphologically identified) adult fishes. This project demonstrates the utility of using sequence data to identify larval and juvenile rockfishes, which are known to be difficult or impossible to identify to species morphologically.
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  • Johansson, Mattias L.; Litz, Marisa N.C.; Brodeur, Richard D.; Britt, Tristan A.; Vanegas, Camilo A.; Hyde, John R.; Banks, Michael A. (2018): Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics. Oregon State University. Dataset. https://doi.org/10.7267/N94X55Z6
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Related Items
  • Hyde JR and Vetter RD. 2007. The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier). Mol. Phylogenet. Evol. 44: 790-811.
  • Taylor, CA, Watson W, Chereskin T, Hyde J, Vetter R. 2004. Retention of larval rockfishes, Sebastes, near natal habitat in the Southern California Bight, as indicated by molecular identification methods. California Cooperative Oceanic Fisheries Investigations Reports. 45:152-166.
Funding Statement (additional comments about funding)
  • This research was funded by the NOAA Northwest Fisheries Science Center Stock Assessment Improvement Program, the Oregon State University Cooperative Institute for Marine Resources Studies, the NSF Research Experiences for Undergraduates program, and the NOAA NWFSC Conservation Biology Division.
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  • This dataset is analyzed in Johansson ML, Litz MNC, Brodeur RD, Britt TA, Vanegas CA, Hyde JR, Banks MA. In Review. Seasonal distribution and environmental associations among late larval and juvenile rockfish (Sebastes spp.) off Oregon and Washington: new insights based on genetics. Fishery Bulletin.
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Thumbnail Title Date Uploaded Visibility Actions
file details AllRFIDSequences.TXT 2018-05-11 Public Download
file details HydeSamples.TXT 2018-05-11 Public Download
file details Identical_as_Consensus.TXT 2018-05-11 Public Download
file details RFID_Metadata_20180515.txt 2018-05-15 Public Download