TableS11_gene_differential-expression.txt

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Citeable URL: https://ir.library.oregonstate.edu/concern/datasets/nk322k190

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Attribute Name	Values
Creator	Bredeweg, Erin L. Freitag, Michael
Abstract	Transcription factor (TF) genes were modified endogenously to include epitope tags for identification of TF protein binding sites by Chromatin Immunoprecipitation (ChIP), followed by high throughput sequencing. We used RNA-sequencing in carbon sources of sucrose, butyrate, and oleate in far-1, far-2, and a double far-1; far-2 mutant to find transcripts influenced by FAR regulation. This dataset includes (1) ChIP peaks indicative of genomic binding locations of FAR-1 and FAR-2 (4 files), (2) analysis of gene ontology (GO) by two methods (4 files), and (3) total RNA-sequencing for wild type, delta-far-1, delta-far-2, and delta-far-1; delta-far-2 mutants, with differential expression as evaluated by CuffDiff (2 files).
Keyword	cutinase transcription factor beta-oxidation lipase transcription factor network glyoxylate cycle fatty acid regulator
Rights Statement	No Copyright - United States
Related Items	See related Ph.D. dissertation.

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