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Creason, Allison L.
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Vandeputte, Olivier M.
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Savory, Elizabeth A.
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Davis II, Edward W.
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Putnam, Melodie L.
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Hu, Erdong
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Swader-Hines, David
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Mol, Adeline
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Baucher, Marie
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Prinsen, Els
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Zdanowska, Magdalena
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Givan, Scott A.
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El Jaziri, Mondher
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Loper, Joyce E.
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Mahmud, Taifo
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Chang, Jeff H.
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| Abstract |
- We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was used to automate the annotation of the genome sequences. The genome sequences, genbank files, and nucleotide and amino acid sequences for the predicted coding sequences are provided.
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| Citation |
- Creason, Allison L.; Vandeputte, Olivier M.; Savory, Elizabeth A.; Davis II, Edward W.; Putnam, Melodie L.; Hu, Erdong; Swader-Hines, David; Mol, Adeline; Baucher, Marie; Prinsen, Els; Zdanowska, Magdalena; Givan, Scott A.; El Jaziri, Mondher; Loper, Joyce E.; Mahmud, Taifo; Chang, Jeff H. (2014): Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci. Oregon State University. Dataset. http://dx.doi.org/10.7267/N9PN93H8
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| Rights Statement |
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| Related Items |
- See the related paper, "Creason AL, Vandeputte OM, Savory EA, Davis EW II, Putnam ML, et al. (2014) Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci. PLoS ONE 9(7): e101996. doi:10.1371/journal.pone.0101996."
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| Funding Statement (additional comments about funding) |
- Agricultural Research Foundation
- This work is supported by a grant from the Agricultural Research Foundation awarded to JHC. EAS is supported by USDA NIFA post-doctoral fellowship #2013-67012-21139. EWD is supported by a Provost’s Distinguished Graduate Fellowship awarded by Oregon State University. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1314109 to EWD. Any opinion, findings, and conclusions or recommendations expressed in this material are those of the authors(s) and do not necessarily reflect the views of the National Science Foundation. This work is also supported in part by the Society of American Florists and a cooperative agreement with USDA-ARS awarded to MLP. OMV is a Post-doctoral Researcher of the FRS-FNRS (Fonds de la Recherche Scientifique, Belgium) and supported by grants from FRS-FNRS and the Fonds David et Alice Van Buuren (Belgium). MB is a Senior Research Associate of the FRS-FNRS (Fonds de la Recherche Scientifique, Belgium).
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| Additional Information |
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