Dataset

 

Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci Public Deposited

https://ir.library.oregonstate.edu/concern/datasets/qn59q765p

Descriptions

Attribute NameValues
Creator
Abstract
  • We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was used to automate the annotation of the genome sequences. The genome sequences, genbank files, and nucleotide and amino acid sequences for the predicted coding sequences are provided.
License
Resource Type
DOI
Date Available
Date Issued
Citation
  • Creason, Allison L.; Vandeputte, Olivier M.; Savory, Elizabeth A.; Davis II, Edward W.; Putnam, Melodie L.; Hu, Erdong; Swader-Hines, David; Mol, Adeline; Baucher, Marie; Prinsen, Els; Zdanowska, Magdalena; Givan, Scott A.; El Jaziri, Mondher; Loper, Joyce E.; Mahmud, Taifo; Chang, Jeff H. (2014): Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci. Oregon State University. Dataset. http://dx.doi.org/10.7267/N9PN93H8
Keyword
Rights Statement
Related Items
Funding Statement (additional comments about funding)
  • This work is supported by a grant from the Agricultural Research Foundation awarded to JHC. EAS is supported by USDA NIFA post-doctoral fellowship #2013-67012-21139. EWD is supported by a Provost’s Distinguished Graduate Fellowship awarded by Oregon State University. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1314109 to EWD. Any opinion, findings, and conclusions or recommendations expressed in this material are those of the authors(s) and do not necessarily reflect the views of the National Science Foundation. This work is also supported in part by the Society of American Florists and a cooperative agreement with USDA-ARS awarded to MLP. OMV is a Post-doctoral Researcher of the FRS-FNRS (Fonds de la Recherche Scientifique, Belgium) and supported by grants from FRS-FNRS and the Fonds David et Alice Van Buuren (Belgium). MB is a Senior Research Associate of the FRS-FNRS (Fonds de la Recherche Scientifique, Belgium).
  • Agricultural Research Foundation
Peer Reviewed
Language
Replaces
Additional Information
  • description.provenance : Submitted by Amanda Whitmire (amanda.whitmire@oregonstate.edu) on 2014-06-05T17:47:32ZNo. of bitstreams: 2license_rdf: 1089 bytes, checksum: 0a703d871bf062c5fdc7850b1496693b (MD5)placeholder.txt: 224 bytes, checksum: bf2bb61d78831061bb1258faf048e778 (MD5)
  • description.provenance : Approved for entry into archive by Amanda Whitmire(amanda.whitmire@oregonstate.edu) on 2014-06-05T20:25:27Z (GMT) No. of bitstreams: 2license_rdf: 1089 bytes, checksum: 0a703d871bf062c5fdc7850b1496693b (MD5)placeholder.txt: 224 bytes, checksum: bf2bb61d78831061bb1258faf048e778 (MD5)
  • description.provenance : Made available in DSpace on 2014-06-05T20:25:27Z (GMT). No. of bitstreams: 2license_rdf: 1089 bytes, checksum: 0a703d871bf062c5fdc7850b1496693b (MD5)placeholder.txt: 224 bytes, checksum: bf2bb61d78831061bb1258faf048e778 (MD5)

Relationships

Parents:

This work has no parents.

Items