Dataset

 

Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets" Public Deposited

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https://ir.library.oregonstate.edu/concern/datasets/x920g302b

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Abstract
  • This dataset contains the taxonomic classifications of environmental DNA (eDNA) sequences obtained from Fall Creek, Oregon, via microfluidic multiplex PCR (Fluidigm Access Array) and high-throughput sequencing. It is accompanied by electrofishing counts taken at the same time as the eDNA samples. Metadata and R scripts are provided to analyze the eDNA results, compare the electrofishing and eDNA results, and summarize the eDNA data into a format suitable for the visualization program Krona. Sequence data is include, along with metadata files to allow sequence deconvolution. Keywords: Aquatic biodiversity conservation; Environmental testing; Aquatic biodiversity; Aquatic organisms; eDNA; environmental DNA; Stream health
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Citation
  • Hauck, L. L., Weitemier, K. A., Penaluna, B. E., Garcia, T., & Cronn, R. (2019). Supplemental data to "Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from diverse taxonomic targets" (Version 1) [Data set]. Oregon State University. https://doi.org/10.7267/X920G302B
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Hydrologic Unit Code
  • 171002050401
Funding Statement (additional comments about funding)
  • Financial support was provided by National Council for Air and Stream Improvement, Inc and the US Forest Service Pacific Northwest Research Station
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