Gramene database in 2010: updates and extensions Public Deposited

http://ir.library.oregonstate.edu/concern/defaults/2801ph06z

This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Oxford University Press. The published article can be found at:  http://nar.oxfordjournals.org/.

Descriptions

Attribute NameValues
Creator
Abstract or Summary
  • Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with the addition of an Ensembl genome browser and has expanded in the last decade to become a robust resource for plant genomics hosting a wide array of data sets including quantitative trait loci (QTL), metabolic pathways, genetic diversity, genes, proteins, germplasm, literature, ontologies and a fully-structured markers and sequences database integrated with genome browsers and maps from various published studies (genetic, physical, bin, etc.). In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data.
Resource Type
DOI
Date Available
Date Issued
Citation
  • Youens-Clark, K., Buckler, E., Casstevens, T., Chen, C., DeClerck, G., Derwent, P., ... & Ware, D. (2010). Gramene database in 2010: updates and extensions. Nucleic Acids Research, 39, D1085-D1094. doi:10.1093/nar/gkq1148
Academic Affiliation
Series
Rights Statement
Funding Statement (additional comments about funding)
Publisher
Peer Reviewed
Language
Replaces
Additional Information
  • description.provenance : Submitted by Erin Clark (erin.clark@oregonstate.edu) on 2014-07-29T20:03:05Z No. of bitstreams: 2 license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) JaiswalPankajBotanyPlantPathologyGrameneDatabase2010.pdf: 15686525 bytes, checksum: 5b89371ad959abcd781efd6619627c65 (MD5)
  • description.provenance : Made available in DSpace on 2014-07-29T20:03:22Z (GMT). No. of bitstreams: 2 license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) JaiswalPankajBotanyPlantPathologyGrameneDatabase2010.pdf: 15686525 bytes, checksum: 5b89371ad959abcd781efd6619627c65 (MD5) Previous issue date: 2010-11-13
  • description.provenance : Approved for entry into archive by Erin Clark(erin.clark@oregonstate.edu) on 2014-07-29T20:03:22Z (GMT) No. of bitstreams: 2 license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) JaiswalPankajBotanyPlantPathologyGrameneDatabase2010.pdf: 15686525 bytes, checksum: 5b89371ad959abcd781efd6619627c65 (MD5)

Relationships

Parents:

This work has no parents.

Last modified

Downloadable Content

Download PDF

Items