Gramene database in 2010: updates and extensions

Youens-Clark, Ken; Buckler, Ed; Casstevens, Terry; Chen, Charles; DeClerck, Genevieve; Derwent, Paul; Dharmawardhana, Palitha; Jaiswal, Pankaj; Kersey, Paul; Karthikeyan, A. S.; Lu, Jerry; McCouch, Susan R.; Ren, Liya; Spooner, William; Stein, Joshua C.; Thomason, Jim; Wei, Sharon; Ware, Doreen

Citeable URL: https://ir.library.oregonstate.edu/concern/articles/2801ph06z

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Creator	Youens-Clark, Ken Buckler, Ed Casstevens, Terry Chen, Charles DeClerck, Genevieve Derwent, Paul Dharmawardhana, Palitha Jaiswal, Pankaj Kersey, Paul Karthikeyan, A. S. Lu, Jerry McCouch, Susan R. Ren, Liya Spooner, William Stein, Joshua C. Thomason, Jim Wei, Sharon Ware, Doreen
Abstract	Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with the addition of an Ensembl genome browser and has expanded in the last decade to become a robust resource for plant genomics hosting a wide array of data sets including quantitative trait loci (QTL), metabolic pathways, genetic diversity, genes, proteins, germplasm, literature, ontologies and a fully-structured markers and sequences database integrated with genome browsers and maps from various published studies (genetic, physical, bin, etc.). In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data. This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Oxford University Press. The published article can be found at: http://nar.oxfordjournals.org/.
Resource Type	Article
DOI	https://doi.org/10.1093/nar/gkq1148
Date Available	2014-07-29T20:03:22+00:00
Date Issued	2010-11-13
Citation	Youens-Clark, K., Buckler, E., Casstevens, T., Chen, C., DeClerck, G., Derwent, P., ... & Ware, D. (2010). Gramene database in 2010: updates and extensions. Nucleic Acids Research, 39, D1085-D1094. doi:10.1093/nar/gkq1148
Journal Title	Nucleic Acids Research
Journal Volume	39
Academic Affiliation	Botany and Plant Pathology
权利声明	In Copyright
Funding Statement (additional comments about funding)	National Science Foundation (0703908, 0851652). Funding for open access charge: National Science Foundation (0321685); NSF DBI (0703908).
Publisher	Oxford University Press
Peer Reviewed	Yes
Language	English [eng]
Replaces	http://hdl.handle.net/1957/50882

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Gramene database in 2010: updates and extensions

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Gramene database in 2010: updates and extensions

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