Gramene QTL database: development, content and applications Public Deposited

http://ir.library.oregonstate.edu/concern/defaults/zp38wd17w

This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Oxford University Press. The published article can be found at:  http://database.oxfordjournals.org/.

Descriptions

Attribute NameValues
Creator
Abstract or Summary
  • Gramene is a comparative information resource for plants that integrates data across diverse data domains. In this article, we describe the development of a quantitative trait loci (QTL) database and illustrate how it can be used to facilitate both the forward and reverse genetics research. The QTL database contains the largest online collection of rice QTL data in the world. Using flanking markers as anchors, QTLs originally reported on individual genetic maps have been systematically aligned to the rice sequence where they can be searched as standard genomic features. Researchers can determine whether a QTL co-localizes with other QTLs detected in independent experiments and can combine data from multiple studies to improve the resolution of a QTL position. Candidate genes falling within a QTL interval can be identified and their relationship to particular phenotypes can be inferred based on functional annotations provided by ontology terms. Mutations identified in functional genomics populations and association mapping panels can be aligned with QTL regions to facilitate fine mapping and validation of gene–phenotype associations. By assembling and integrating diverse types of data and information across species and levels of biological complexity, the QTL database enhances the potential to understand and utilize QTL information in biological research.
Resource Type
DOI
Date Available
Date Issued
Citation
  • Ni, J., Pujar, A., Youens-Clark, K., Yap, I., Jaiswal, P., Tecle, I., ... & McCouch, S. (2009). Gramene QTL database: development, content and applications. Database, 2009. doi:10.1093/database/bap005
Academic Affiliation
Series
Rights Statement
Funding Statement (additional comments about funding)
Publisher
Peer Reviewed
Language
Replaces
Additional Information
  • description.provenance : Approved for entry into archive by Erin Clark(erin.clark@oregonstate.edu) on 2014-07-29T20:14:57Z (GMT) No. of bitstreams: 2 license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) JaiswalPankajBotanyPlantPathologyGrameneQTLDatabase.pdf: 526009 bytes, checksum: 3ce1b4bb072ceab919a6c0d8d6c3507f (MD5)
  • description.provenance : Submitted by Erin Clark (erin.clark@oregonstate.edu) on 2014-07-29T20:14:32Z No. of bitstreams: 2 license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) JaiswalPankajBotanyPlantPathologyGrameneQTLDatabase.pdf: 526009 bytes, checksum: 3ce1b4bb072ceab919a6c0d8d6c3507f (MD5)
  • description.provenance : Made available in DSpace on 2014-07-29T20:14:58Z (GMT). No. of bitstreams: 2 license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) JaiswalPankajBotanyPlantPathologyGrameneQTLDatabase.pdf: 526009 bytes, checksum: 3ce1b4bb072ceab919a6c0d8d6c3507f (MD5) Previous issue date: 2009-05-08

Relationships

In Administrative Set:
Last modified: 07/11/2017 Default
Citations:

EndNote | Zotero | Mendeley