The Pursuit of Hoppiness : Propelling Hop into the Genomic Era Public Deposited

http://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/sj139514b

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  • Hop (Humulus lupulus L. var lupulus) is a plant of great cultural significance, used as a medicinal herb for thousands of years, and for flavor and as a preservative in brewing beer. Studies of the medicinal effects of the unique compounds produced by hop have led to interest from the pharmacy and healthcare industries. Although many industries have interest in the plant itself and scientists are interested in the evolution of the Cannabaceae sex chromosomes, little effort has gone into developing genomic resources. H. lupulus is a highly heterozygous, repeat-rich, plant genome with a size of about 2.8 gigabases. This combination presents an immense challenge to studying the genomics of hop. Here we present, a web portal for studying hop genomics, a novel hop genome assembly, gene annotations for both draft genome assemblies, an evolutionary biology study regarding the hop sex chromosomes, and a novel way of modeling transcripts using deep learning. The combination of these manuscripts provides a framework for the future of hop genomics.
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  • description.provenance : Submitted by Steven Hill (hillst@oregonstate.edu) on 2016-07-08T19:50:06Z No. of bitstreams: 2 license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) HillStevenT2016.pdf: 1646301 bytes, checksum: 84ba34e7026588e8dfcb22d5ca231c34 (MD5)
  • description.provenance : Submitted by Steven Hill (hillst@oregonstate.edu) on 2016-07-23T00:36:18Z No. of bitstreams: 2 HillStevenT2016.pdf: 1653521 bytes, checksum: 829a667073246a09253bac4db3e403ca (MD5) license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5)
  • description.provenance : Approved for entry into archive by Laura Wilson(laura.wilson@oregonstate.edu) on 2016-07-25T21:47:07Z (GMT) No. of bitstreams: 2 HillStevenT2016.pdf: 1653521 bytes, checksum: 829a667073246a09253bac4db3e403ca (MD5) license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5)
  • description.provenance : Made available in DSpace on 2016-07-25T21:47:07Z (GMT). No. of bitstreams: 2 HillStevenT2016.pdf: 1653521 bytes, checksum: 829a667073246a09253bac4db3e403ca (MD5) license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5) Previous issue date: 2016-06-10
  • description.provenance : Rejected by Julie Kurtz(julie.kurtz@oregonstate.edu), reason: Rejecting to make revisions to the following - 1) Title page - add 3 spaces after Oregon State University - Change Presented Defense Date to read - Presented June 10, 2016 - Change June 2016 to read - Commencement June 2017 2) Approval page - 1st signature line should be changed to read - Co-Major Professor, representing Computer Science. 2nd signature line, change to read - Co-Major Professor, representing Compute Science. One the bottom, your name is on the following page, should be under the signature line and add your middle initial so your name is the same throughout. 3) Change June 10th, 2016 to June 10, 2016 4) Remove the page numbers in the pretext pages, they are all page 1 and a couple page 2 5) Page numbers for the actual thesis should be in the top right corner. 6) The actual thesis should be either 1.5 or double spaced. I have printed out these pages and marked the edits and will email them to you. Everything else looks good. Once revised, log back into ScholarsArchive and go to the upload page. Replace the attached file with the revised PDF and resubmit. Thanks, Julie on 2016-07-13T16:54:21Z (GMT)
  • description.provenance : Approved for entry into archive by Julie Kurtz(julie.kurtz@oregonstate.edu) on 2016-07-25T17:39:22Z (GMT) No. of bitstreams: 2 HillStevenT2016.pdf: 1653521 bytes, checksum: 829a667073246a09253bac4db3e403ca (MD5) license_rdf: 1379 bytes, checksum: da3654ba11642cda39be2b66af335aae (MD5)

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