This documentation file was generated on 2020-07-09 by Inga Reich ------------------- # GENERAL INFORMATION ------------------- 1. Title of Dataset Pitfall and refuge trap sampling Linn Co March 2018-June 2019 2. Creator Information Name: Inga Reich Institution: Oregon State University / National University of Ireland Galway College, School or Department: Crop and Soil Science / Applied Ecology Unit Address: 3050 SW Campus Way, Corvallis OR, 97331 USA / University Road, Galway, Ireland Email: ingaimperio@gmail.com ORCID: https://orcid.org/0000-0002-7962-3969 Role: Conceptualization, methodology, formal analysis, investigation, data curation, writing – original draft, visualization, project administration, funding acquisition Name: Casi Jessie Institution: Oregon State University College, School or Department: Crop and Soil Science Address: 3050 SW Campus Way, Corvallis OR, 97331 USA Email: casi.jessie@gmail.com Role: Methodology, investigation, writing – review and editing Name: Seung-Joon Ahn Institution: USDA-ARS / Mississippi State University College, School or Department: Horticultural Crops Research Lab/Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology Address: Corvallis OR, USA / Mississippi State, MS, USA Email: seungjoon.ahn@msstate.edu Role: Methodology, investigation, formal analysis, writing – review and editing, supervision Name: Man-Yeon Choi Institution: USDA-ARS College, School or Department: Horticultural Crops Research Lab Address: Corvallis OR, USA Email: mychoi@ars.usda.gov Role: Resources, writing – review and editing, supervision Name: Christopher Williams Institution: Liverpool John Moores University College, School or Department: School of Biological and Environmental Sciences Address: Liverpool, UK Email: chris.david.williams@gmail.com ORCID: https://orcid.org/0000-0003-0528-3436 Role: Formal analysis, writing – review and editing Name: Mike Gormally Institution: National University of Ireland Galway College, School or Department: Applied Ecology Unit Address: University Road, Galway, Ireland Email: mike.gormally@nuigalway.ie Role: Conceptualization, methodology, validation, writing – review and editing, supervision, project administration, funding acquisition Name: Rory Mc Donnell Institution: Oregon State University College, School or Department: Crop and Soil Science Address: 3050 SW Campus Way, Corvallis OR, 97331 USA Email: rory.mcdonnell@oregonstate.edu Role: Conceptualization, methodology, validation, resources, writing – review and editing, supervision, project administration, funding acquisition 3. Collaborator information Name: Andy Colton Role: Data collection Name: Maria Cordoba Role: Data collection Name: Matthew Klein Role: Data collection Name: Nina Rudin Role: Data collection Name: Taylor Lust Role: Data collection Name: Chloe Hull Role: Data collection Name: Mike Hampton Role: Data collection Name: Warren Anderson Role: Data collection 3. Contact Information Name: Inga Reich Institution: Oregon State University / National University of Ireland Galway College, School or Department: Crop and Soil Science / Applied Ecology Unit Address: 3050 SW Campus Way, Corvallis OR, 97331, USA / University Road, Galway, Ireland Email: ingaimperio@gmail.com ORCID: https://orcid.org/0000-0002-7962-3969 Name: Rory Mc Donnell Institution: Oregon State University College, School or Department: Crop and Soil Science Address: 3050 SW Campus Way, Corvallis OR, 97331 USA Email: rory.mcdonnell@oregonstate.edu ------------------- CONTEXTUAL INFORMATION ------------------- 1. Abstract for the dataset Numbers of carabid beetles, caterpillars, cranefly larvae and slugs collected from pitfall and refuge traps in ten Annual Ryegrass fields in Linn County, Oregon between March 23, 2018 and June 20, 2019. Given are details on sampling date, trap, size and sex (carabids only), weight (slugs only) and species (where possible). Provided are also the results of the molecular gut content analysis of the carabid beetles: Date of gut dissection and associated details on the amount of eggs (if specimen was female), gut size (0-5, with 0 being empty and 5 being very full), amount of mites on elytra and wing status (brachypterous (BR) or macropterous(MA)), date of DNA extraction from gut contents and results of the qPCR screening for Gastropoda, Lepidoptera and Tipulidae DNA (‘+’ for positive, ‘-‘ for negative), as well as the ID of the sample pool for Next generation Sequencing analysis. 2. Context of the research project that this dataset was collected for. The data were collected to investigate the conservation biological control potential of carabid beetles for common pests in Annual ryegrass 3. Date of data collection: 2018-03-23 until 2019-06-20 4. Geographic location of data collection: Around Shedd, Halsey and Irish Bend, Linn County, Oregon 5. Funding sources that supported the collection of the data: European Union’s Horizon 2020 Research and Innovation Programme, Marie Skłodowska-Curie grant agreement No. REP-750296 -------------------------- SHARING/ACCESS INFORMATION -------------------------- 1. Licenses/restrictions placed on the data: This dataset is published under a Creative Commons Attribution License (CC-BY 4.0) http://creativecommons.org/licenses/by/4.0/ 2. Links to publications related to the dataset: 3. Links to other publicly accessible locations of the data: 4. Recommended citation for the data: Reich, I. (2020) Pitfall and refuge trap sampling Linn Co March 2018 - June 2019 (Version 1) [Dataset] Oregon State University https://doi.org/10.7267/p2677251h 5. Dataset Digital Object Identifier (DOI) https://doi.org/10.7267/p2677251h 6. Limitations to reuse -------------------------- VERSIONING AND PROVENANCE -------------------------- 1. Last modification date 2020-07-09 2. Links/relationships to other versions of this dataset: 3. Was data derived from another source? No 4. Additional related data collected that was not included in the current data package: Details on other invertebrates found during the study will be included at a later point -------------------------- METHODOLOGICAL INFORMATION -------------------------- 1. Description of methods used for collection/generation of data: Data are based on pitfall traps (40 per field, arranged in two rows at 10m and 70 m into the field with 5 sampling points each) and refuge traps (one per sampling point). Data were collected once a week, alternating between pitfall and refuge traps. 2. Methods for processing the data: See Reich et al (under review) ‘Assessment of the biological control potential of common carabid beetle species for autumn and winter active pests (Gastropoda, Lepidoptera, Diptera: Tipulidae) in Annual ryegrass in Western Oregon’ --------------------- DATA & FILE OVERVIEW --------------------- 1. File List A. Filename: Carabidae.csv Short description: Data for Carabids, including results of qPCR B. Filename: Pests.csv Short description: data for lepidoptera, tipulidae and gastropoda 2. Relationship between files: They were collected during the same study 3. Formats Format: tabular data in .csv standard ----------------------------------------- TABULAR DATA-SPECIFIC INFORMATION FOR: Carabidae.csv ----------------------------------------- 1. Number of variables: 22 2. Number of cases/rows: 2628 3. Missing data codes: ? = not measured . = not included in procedure/analysis NA = not applicable 4. Variable List A. Name: Sampling date Description: Date when sample was taken; format: D(D).M(M).YYYY B. Name: Site ID Description: ID of sample site, options: E1, E2, E3, E4, E5, C1, C2, C3, C4, C5 (E = experimental: not tilled 2017, tilled 2018; C = control: tilled 2017 and 2018; 1-3: gravel field margin, 4-5: vegetation field margin). C. Name: Row distance into the field [m] Description: Position of the row of sampling points, either at 10m or 70m into the field. D. Name: Sampling Point ID Description: Combination of ‘row’ (1 or 2) and sampling point replicate (A-E) E. Name: Size [mm] Description: length of carabid in mm, measured from the front margin of the labrum mandibles to end of the elytra F. Name: Sex Description: Sex of the carabid beetle, either M (male) or F (female) G. Name: Genus Description: Genus of carabid H. Name: Species Description: species of carabid I. Name: Life stage Description: Life stage of the beetle, either ‘imago’ or ‘larva’ J. Name: Teneral Description: Maturity stage of the imago beetle, either ‘Y’ (yes), ‘N’ (no) or ‘NA’ in the case of Life stage = ‘larva’ K. Name: Gut ID Description: Identification number of the dissected gut L. Name: Date of gut dissection Description: Date when the gut was dissected from beetle; format: D(D).M(M).YYYY M. Name: Number of eggs Description: Number of developed eggs in dissected female beetle. ‘NA’ when dissected beetle is male. N. Name: Gut size Description: Size of the dissected gut, scale from 0-5, with 0 = empty and 5 = very full. O. Name: Number of mites Description: Number of mites on the dissected beetles, usually beneath the elytra. P. Name: Wings Description: Either ‘BR’ (brachypterous, reduced), ‘MA’ (macropterous, large) or ‘NA’ when beetle is in ‘larva’ stage Q. Name: Date of DNA extraction Description: Date when the DNA was extracted from beetle gut; format: D(D).M(M).YYYY R. Name: qPCR Gastropoda DNA Description: Result of the qPCR screening the gut for Gastropoda DNA; either ‘+’ = positive, or ‘-‘ = negative S. Name: qPCR Lepidoptera DNA Description: Result of the qPCR screening the gut for Lepidoptera DNA; either ‘+’ = positive, or ‘-‘ = negative T. Name: qPCR Tipulidae DNA Description: Result of the qPCR screening the gut for Lepidoptera DNA; either ‘+’ = positive, or ‘-‘ = negative U. Name: Sample pool ID for Illumina MiSeq Description: ID of the sample pool that was sent for next generation sequencing on Illumina MiSeq in which this particular gut extraction was included ----------------------------------------- TABULAR DATA-SPECIFIC INFORMATION FOR: Pests.csv ----------------------------------------- 1. Number of variables: 12 2. Number of cases/rows: 2874 3. Missing data codes: ? = not identified/measured 4. Variable List A. Name: Sampling date Description: Date when sample was taken; format: D(D).M(M).YY B. Name: Site ID Description: ID of sample site, options: E1, E2, E3, E4, E5, C1, C2, C3, C4, C5 (E = experimental: not tilled 2017, tilled 2018; C = control: tilled 2017 and 2018; 1-3: gravel field margin, 4-5: vegetation field margin). C. Name: Row distance into the field [m] Description: Position of the row of sampling points, either at 10m or 70m into the field. D. Name: Sampling Point ID Description: Combination of row (‘1’ at 10m, ‘2’ at 70m) and sampling point replicate (A-E) E. Name: Life stage Description: Life stage of the pests, either ‘egg’, ‘larva’, ‘pupa’ or ‘imago’. F. Name: Order Description: Order of the pest G. Name: Family Description: Family of the pest H. Name: Genus Description: Genus of the pest I. Name: Species Description: Species of the pest J. Name: Amount Description: Number of pest species found at this time/trap point K. Name: Weight [g] Description: Weight of the pest in grams L. Name: Trap Description: Trap type with which pest was caught