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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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Browsing Faculty Research Publications (Botany and Plant Pathology) by Title

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  • Manning, Viola A.; Ciuffetti, Lynda M. (Public Library of Science, 2015-04-06)
    Pyrenophora tritici-repentis, the causal agent of tan spot disease of wheat, mediates disease by the production of host-selective toxins (HST). The known toxins are recognized in an 'inverse' gene-for-gene manner, where ...
  • Okrent, Rachel A.; Halgren, Anne B.; Azevedo, Mark D.; Chang, Jeff H.; Mills, Dallice I.; Armstrong, Donald J.; et al. (Society for General Microbiology, 2014-08-27)
    Pseudomonas fluorescens WH6 secretes a germination-arrest factor (GAF) that we have identified previously as 4-formylaminooxyvinylglycine. GAF irreversibly inhibits germination of the seeds of numerous grassy weeds and ...
  • Sheard, John W.; McCune, Bruce; Tønsberg, Tor (The American Bryological and Lichenological Society, Inc., 2014-07-30)
    Rinodina pallidescens is described as a new species, endemic to southern Alaska. Rinodina buckii and R. oregana are discussed in terms of their range extensions and possible phytogeographic histories.
  • Yospin, Gabriel I.; Bridgham, Scott D.; Neilson, Ronald P.; Bolte, John P.; et al. (Ecological Society of America, 2015-01)
    We developed a new climate-sensitive vegetation state-and-transition simulation model (CV-STSM) to simulate future vegetation at a fine spatial grain commensurate with the scales of human land-use decisions, and under ...
  • Shen, Qingxi J.; Yu, Diqiu; Jeon, Jong-Seong; Piffanelli, Pietro; Abbruscato, Pamela; Guo, Ze-Jian; Zhang, Yuanji; Itoh, Takeshi; Lee, Sung S.; Buell, C. Robin; Nagato, Yasuo; McCouch, Susan; Yano, Masahiro; Wang, Guo-liang; Jena, Kshirod K.; Xiong, Lizhong; Meyers, Blake; Jaiswal, Pankaj; Yamazaki, Yukiko (Springer, 2012-02-27)
    Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) o ...
  • Rosso, Abbey; Neitlich, Peter; Smith, Robert J. (Public Library of Science, 2014-07-31)
    Terrestrial lichen biomass is an important indicator of forage availability for caribou in northern regions, and can indicate vegetation shifts due to climate change, air pollution or changes in vascular plant community ...
  • McCune, Bruce (IAVS Opulus Press, Uppsala, 2006)
    Questions: Can a statistical model be designed to represent more directly the nature of organismal response to multiple interacting factors? Can multiplicative ernel smoothers be used for this purpose? What advantages do ...
  • Seguin, Jonathan; Rajeswaran, Rajendran; Malpica-López, Nachelli; Martin, Robert R.; Kasschau, Kristin; Dolja, Valerian V.; Otten, Patricia; Farinelli, Laurent; Pooggin, Mikhail M. (Public Library of Science, 2014-02-11)
    Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are generated by the evolutionary conserved RNA interference (RNAi) machinery that regulates gene expression and defends against invasive nu ...
  • Walls, Ramona L.; Athreya, Balaji; Cooper, Laurel; Elser, Justin; Gandolfo, Maria A.; Jaiswal, Pankaj; Mungall, Christopher J.; Preece, Justin; Rensing, Stefan; Smith, Barry; Stevenson, Dennis W. (Botanical Society of America, 2012-08)
    Premise of the study: Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregati ...
  • Oellrich, Anika; Walls, Ramona L.; Cannon, Ethalinda K. S.; Cooper, Laurel; Jaiswal, Pankaj; Moore, Laura; et al. (BioMed Central Ltd., 2015-02-25)
    BACKGROUND: Plant phenotype datasets include many different types of data, formats, and terms from specialized vocabularies. Because these datasets were designed for different audiences, they frequently contain language ...
  • Kumar, T.K. Arun; Healy, Rosanne; Spatafora, Joseph W.; Blackwell, Meredith; McLaughlin, David J. (The Mycological Society of America, 2012-03)
    Molecular phylogenctic analyses indicate that the monophyletic classes Orbiliomycetes and Pezizomycetes are among the earliest diverging branches of Pezizomycotina, the largest subphylum of the Ascomycota. Although Orbil ...
  • Arighi, Cecilia N.; Carterette, Ben; Cohen, K. Bretonnel; Krallinger, Martin; Wilbur, W. John; Fey, Petra; Dodson, Robert; Cooper, Laurel; Van Slyke, Ceri E.; Dahdul, Wasila; Mabee, Paula; Li, Donghui; Harris, Bethany; Gillespie, Marc; Jimenez, Silvia; Roberts, Phoebe; Matthews, Lisa; Becker, Kevin; Drabkin, Harold; Bello, Susan; Licata, Luana; Chatr-aryamontri, Andrew; Schaeffer, Mary L.; Park, Julie; Haendel, Melissa; Van Auken, Kimberly; Li, Yuling; Chan, Juancarlos; Muller, Hans-Michael; Cui, Hong; Balhoff, James P.; Wu, Johnny Chi-Yang; Lu, Zhiyong; Wei, Chih-Hsuan; Tudor, Catalina O.; Raja, Kalpana; Subramani, Suresh; Natarajan, Jeyakumar; Cejuela, Juan Miguel; Dubey, Pratibha; Wu, Cathy (Oxford University Press, 2013-01-17)
    In many databases, biocuration primarily involves literature curation, which usually involves retrieving relevant articles, extracting information that will translate into annotations and identifying new incoming literat ...
  • Stockwell, Virginia O.; Davis, Edward W., II; Carey, Alyssa; Shaffer, Brenda T.; Mavrodi, Dmitri V.; Hassan, Karl A.; Hockett, Kevin; Thomashow, Linda S.; Paulsen, Ian T.; Lopera, Joyce E. (American Society for Microbiology, 2013-06-28)
    Conjugative plasmids are known to facilitate the acquisition and dispersal of genes contributing to the fitness of Pseudomonas spp. Here, we report the characterization of pA506, the 57-kb conjugative plasmid of Pseudomo ...
  • Morton, Taj; Petricka, Jalean; Corcoran, David L.; Li, Song; Winter, Cara M.; Carda, Alexa; Benfey, Philip N.; Ohler, Uwe; Megraw, Molly (American Society of Plant Biologists, 2014-07)
    Understanding plant gene promoter architecture has long been a challenge due to the lack of relevant large-scale data sets and analysis methods. Here we present a publicly available, large-scale transcription start site ...
  • Floudas, Dimitrios; Binder, Manfred; Riley, Robert; Barry, Kerrie; Blanchette, Robert A.; Henrissat, Bernard; Martínez, Angel T.; Otillar, Robert; Spatafora, Joseph W.; Yadav, Jagjit S.; Aerts, Andrea; Benoit, Isabelle; Boyd, Alex; Carlson, Alexis; Copeland, Alex; Coutinho, Pedro M.; de Vries, Ronald P.; Ferreira, Patricia; Findley, Keisha; Foster, Brian; Gaskell, Jill; Glotzer, Dylan; Gorecki, Pawel; Heitman, Joseph; Hesse, Cedar; Hori, Chiaki; Igarashi, Kiyohiko; Jurgens, Joel A.; Kallen, Nathan; Kersten, Phil; Kohler, Annegret; Kues, Ursula; Kumar, T. K. Arun; Kuo, Alan; LaButti, Kurt; Larrondo, Luis F.; Lindquist, Erika; Ling, Albee; Lombard, Vincent; Lucas, Susan; Lundell, Taina; Martin, Rachael; McLaughlin, David J.; Morgenstern, Ingo; Morin, Emanuelle; Murat, Claude; Nagy, Laszlo G.; Nolan, Matt; Ohm, Robin A.; Patyshakuliyeva, Aleksandrina; Rokas, Antonis; Ruiz-Duenas, Francisco J.; Sabat, Grzegorz; Salamov, Asaf; Samejima, Masahiro; Schmutz, Jeremy; Slot, Jason C.; St. John, Franz; Stenlid, Jan; Sun, Hui; Sun, Sheng; Syed, Khajamohiddin; Tsang, Adrian; Wiebenga, Ad; Young, Darcy; Pisabarro, Antonio; Eastwood, Daniel C.; Martin, Francis; Cullen, Dan; Grigoriev, Igor V.; Hibbett, David S. (American Association for the Advancement of Science, 2012-06-29)
    Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which a ...
  • Jeong, Dong-Hoon; Schmidt, Skye A.; Rymarquis, Linda A.; Park, Sunhee; Ganssmann, Matthias; German, Marcelo A.; Accerbi, Monica; Zhai, Jixian; Fahlgren, Noah; Fox, Samuel E.; Garvin, David F.; Mockler, Todd C.; Carrington, James C.; Meyers, Blake C.; Green, Pamela J. (BioMed Central Ltd., 2013-12-24)
    BACKGROUND: The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation ...
  • Stockey, Ruth A.; Rothwell, Gar W. (University of Chicago Press, 2013-03)
    A cylindrical permineralized conifer seed cone has been identified from the Officer Member of the Trowbridge Formation, near Izee, in east-central Oregon. The cone is preserved in a Middle Jurassic (Callovian) marine cal ...
  • Escapa, Ignacio H.; Cuneo, Nestor R.; Rothwell, Gar; Stockey, Ruth A. (University of Chicago Press, 2013-03)
    The discovery of 16 cylindrical conifer seed cones at the Estancia Vilan locality in the Late Jurassic Canadon Calcareo Formation of Chubut Province, Patagonia, Argentina, provides anatomically preserved specimens, allow ...
  • Nelson, Peter R.; Kepler, Ryan; Walton, James; Fankhauser, John; Nelson, Laura; Song, Wang Li (The American Bryological and Lichenological Society, Inc., 2012-11-15)
    Parmelina quercina is a well-studied foliose macro-lichen found on rocks and trees in the Northern Hemisphere. Recent studies support multiple species within P. quercina based on material from Europe, North America and w ...
  • Dall Olmo, G.; Boss, E.; Behrenfeld, M.J.; Westberry, T.K. (Optical Society of America, 2012-09-10)
    See article for abstract.

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