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QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice

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dc.creator Smita, Shuchi
dc.creator Lenka, Sangram Keshari
dc.creator Katiyar, Amit
dc.creator Jaiswal, Pankaj
dc.creator Preece, Justin
dc.creator Bansal, Kailash Chander
dc.date.accessioned 2012-09-06T16:55:32Z
dc.date.available 2012-09-06T16:55:32Z
dc.date.issued 2011-07-11
dc.identifier.citation Smita, S., Lenka, S. K., Katiyar, A., Jaiswal, P., Preece, J., & Bansal, K. C. (2011). QlicRice: A web interface for abiotic stress responsive QTL and loci interaction channels in rice. Database : The Journal of Biological Databases and Curation, 2011, bar037. doi: 10.1093/database/bar037 en_US
dc.identifier.uri http://hdl.handle.net/1957/33255
dc.description This is the publisher’s final pdf. The published article is copyrighted by Oxford University Press and can be found at: http://www.oxfordjournals.org/. en_US
dc.description.abstract The QlicRice database is designed to host publicly accessible, abiotic stress responsive quantitative trait loci (QTLs) in rice (Oryza sativa) and their corresponding sequenced gene loci. It provides a platform for the data mining of abiotic stress responsive QTLs, as well as browsing and annotating associated traits, their location on a sequenced genome, mapped expressed sequence tags (ESTs) and tissue and growth stage-specific expressions on the whole genome. Information on QTLs related to abiotic stresses and their corresponding loci from a genomic perspective has not yet been integrated on an accessible, user-friendly platform. QlicRice offers client-responsive architecture to retrieve meaningful biological information-integrated and named 'Qlic Search'-embedded in a query phrase autocomplete feature, coupled with multiple search options that include trait names, genes and QTL IDs. A comprehensive physical and genetic map and vital statistics have been provided in a graphical manner for deciphering the position of QTLs on different chromosomes. A convenient and intuitive user interface have been designed to help users retrieve associations to agronomically important QTLs on abiotic stress response in rice. Database URL: http://nabg.iasri.res.in:8080/qlic-rice/. en_US
dc.language.iso en_US en_US
dc.publisher Oxford University Press en_US
dc.relation.ispartofseries Database : The Journal of Biological Databases and Curation en_US
dc.relation.ispartofseries No. bar037 en_US
dc.subject Gene en_US
dc.subject Genomics en_US
dc.title QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice en_US
dc.type Article en_US
dc.description.peerreview yes en_US
dc.identifier.doi 10.1093/database/bar037


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