The overall goal of this study was to identify multiple scales of habitat use and habitat electivity by redband/steelhead trout and define the limiting factors affecting the distribution patterns of this species during summer flows.
The main objective in chapter 2 was to identify the most important habitat associations that...
Northern anchovy (Engraulis mordax) are a dominant forage fish in the California Current large marine ecosystem (CCLME). However, little is known about northern anchovy abundance, distribution, age structure, or population fluctuations relative to ocean conditions in the eastern boundary upwelling system off the U.S. West Coast. This thesis includes three...
Northern Spotted Owls (Strix occidentalis caurina) are a long-lived forest owl and range-wide declines in their numbers have resulted in the species being listed as threatened under the endangered species act. While many studies have been focused on population trends and reproductive performance of Spotted Owls from different age-classes, none...
Great Salt Lake (GSL), Utah, is surrounded by 191,884 hectares of wetlands. These wetlands provide critical habitat for hundreds of thousands of breeding, migrating and wintering waterfowl each year. As the human population around GSL increases, government officials have proposed to divert more water from the Jordan, Ogden, and Bear...
The population of dusky Canada geese (Branta canadensis occidentalis; hereafter, dusky geese) nesting on the western Copper River Delta (CRD) in south- central Alaska has been in decline since the late 1970s. In an effort to alleviate mammalian predation, increase nest success, and avoid a listing under the U.S. Endangered...
Riparian areas in the arid western United States are critical ecosystems that have been severely degraded by a variety of land and water uses over the last 100 years. In this study, the composition and structure of floodplain vegetation along the Lower Owens River in eastern California was quantitatively described...
High severity fire is a historical and integral disturbance process in coniferous
forest types. Compounded disturbances such as multiple fires or post-disturbance
management activities are increasingly common, but ecological responses are not well
understood and may represent novel types of disturbances. I studied bird and small
mammal communities in the...
Incidental bycatch in commercial fisheries has been identified as a threat to black-footed albatrosses (Phoebastria nigripes) and Laysan albatrosses (P. immutabilis). Effective long-term conservation of these albatrosses necessitates a thorough understanding of their marine distribution, which marine habitats are selected during foraging, and where they are most likely to interact...
Identification of critical habitat for all life stages of commercially exploited fish populations is critical for effective management. Despite a clear need for basic biological information on juvenile rockfish life history, there have been very few efforts to describe distribution and habitat of this life stage, particularly along the Oregon...
Aquatic ecological investigation is expanding to encompass considerations of
multiple scales across large landscapes. Much of the analysis included in this work
focuses specifically on coho salmon (Oncorhynchus kisutch) in multiple subbasins on
the Oregon coast. Coho salmon were chosen for an investigation of spatial scales,
network connections, and life...
The genetic basis of adaptation is complex as many fitness-related traits are quantitative and likely influenced by multiple genes with variable effects across different selective environments. One important adaptation for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which individuals return to natal breeding sites within a reproductive season....
This study was undertaken to determine if strontium chloride could be used to create a trans-generational otolith mark in steelhead (Oncorhynchus mykiss). I completed two strontium injection trials and a survey of juvenile steelhead from various steelhead hatcheries. The two trials measured Sr:Ca ratios in otoliths in response to injections...
Land use alters the physical and biological structure of stream ecosystems and potentially alters their capacity to process nitrogen (N), an essential nutrient that has nearly doubled in abundance on the biosphere
during the past century from human activities. In this dissertation, I quantified uptake and transformation of nitrate (NO₃⁻)...
Frequent or lengthy predation risk can cause one of two modifications of prey feeding
behavior: 1) postponement of feeding to less risky periods, or 2) resumption of feeding
behavior despite persistent risk. North Pacific flatfishes exhibit both of these responses when confronted with temporal variation in risk, and this experimental...
Several large wildfires in southwestern Oregon during the summers of 2001 and 2002 provided the opportunity to investigate the impacts of wildfire on northern spotted owls (Strix occidentalis caurina). I used radio-telemetry and demographic surveys to describe demographic performance and habitat selection of spotted owls in the areas burned by...
I used current water management practices in central and eastern Oregon and Washington as natural experiments to quantify the effects of irrigation water withdrawals on macroinvertebrate community structure and life history strategies. Reduced discharge had direct (e.g. decreased velocity and wetted habitat) and indirect (e.g. increased conductivity and temperature) effects...
Disturbance, whether natural or of human origin, modifies to varying degrees
many ecosystem attributes. Fire is a natural process in the montane forests of southern
Oregon but for much of the 20th century fire was viewed as an apocalypse and thus
fervently suppressed. Effective natural resource management requires an
understanding...
Mark-recapture methods were used to examine watershed-scale survival rates of coastal cutthroat trout (Oncorhynchus clarkii clarkii) from two headwater stream networks located in the foothills of the Cascade Mountain Range, Oregon. Differences in survival were explored among spatial (stream segment, stream network [main stem or tributaries], and watershed) and temporal...
Oregon's only remaining non-reservoir population of adfluvial bull trout (Salvelinus confluentus) is found in Odell Lake, in the headwaters of the Deschutes River. The population size is unknown, but appears to be quite small. Limited spawning and rearing habitats, combined with the effects of introduced species and other anthropogenic changes...
The potential for Rocky Mountain mule deer (Odocoileus hemionus hemionus)
to host exotic chewing lice (Damalinia (Cervicola) sp.) believed to cause deer hair
loss syndrome in Columbian black-tailed deer (Odocoileus hemionus columbianus),
was investigated in captive deer held in pens at E.E. Wilson Wildlife Area, Corvallis,
Oregon from March 2004...
Greater sage-grouse (Centrocercus urophasianus) populations have declined across their geographic range during the last century. They were once widespread throughout the Intermountain West, but lower annual productivity, likely caused by degradation and loss of suitable habitat, has greatly reduced their distribution and population densities. Habitat used for reproduction has been...
Mountain Quail (Oreortyx pictus) populations have declined in the eastern portion of their range during the last century. However, few studies have investigated the nesting habitat and survival of Mountain Quail translocated into an area from which they have been extirpated. We translocated 217 wild Mountain Quail (Oreortyx pictus) from...
Anadromous coastal cutthroat trout Oncorhynchus clarkii clarkii may be highly dependent on estuaries, passing through them multiple times during their lifetime. However, few studies have investigated estuarine use by coastal cutthroat trout and it is often thought that estuaries serve primarily as migration corridors rather than rearing areas. We used...
Wildfire is a largely terrestrial perturbation broadly recognized as an agent of disturbance and ecological change in forested biomes. Effects of post-fire conditions on biotic components of aquatic systems have been less well-documented, although hypothetically, the two are strongly connected. In fact, the influence of wildfire may be most profound...
Since the 1964 earthquake and geologic uplift, beavers (Castor canadensis) have expanded their historic range from the inland (outwash plain) Copper River Delta, Alaska to the once tidally influenced areas of the outer area (uplifted marsh). The uplift presents a unique opportunity to observe beaver expansion, habitat selection and influence...
The role of fire as a natural disturbance, its interactions with nonnative species and effects of repeated fires in the Hawaiian Islands have received little investigation. We are unsure of the role fire played in shaping forest structure and composition as well as affecting evolutionary processes of the native biota....
Because of large declines in abundance of many Eastern Pacific rockfish populations (Genus Sebastes), there has been an increasing effort to improve our understanding of the role of spawning population characteristics and individual reproductive success in recruitment variability and population dynamics. Current methods for assessing sex and maturational status in...
This research was designed to evaluate the Fatty Acid Signature (FAS) technique as a non-lethal alternative to more traditional, and sometimes destructive, methods of studying the diet composition of piscivorous birds. Specifically we tested the technique with Caspian terns (Hydroprogne caspia) which currently nest in large numbers in the Columbia...
I developed a priori hypotheses and used logistic regression to model Greater Sandhill
Crane (Grus canadensis tabida) nest success in relation to weather, habitat and management variables for cranes breeding at Malheur National Wildlife Refuge (MNWR) in southeast Oregon. My primary interest was to investigate the effects of habitat conditions...
Effective treatment of larval bacterial diseases is a difficult problem when
culturing ornamental fish. Oral administration of antibiotics using existing
microparticle types is not effective due to high leakage rates; furthermore, injection of
larvae is not practical. Treatment is currently limited to use of antibiotic baths, . In this
study,...
The absence of a direct, long-term measure of individual Steller sea lion survival led to the development of implanted, delayed transmission satellite tags specifically for this species (Life History Transmitter, LHX). To assess possible effects of implant procedures and LHX tags, we undertook a two-stage approach to monitor: 1) immediate...
Understanding seasonal changes in growth, survival, and movement rates is
crucial to salmonid management. These life history characteristics provide a context for
evaluation of management actions. We evaluated the life history of individually
marked Oncorhynchus mykiss gairdneri in the South Fork John Day River basin in
Northeastern Oregon. This thesis...
First introduced to the USA in 1958, Myxobolus cerebralis, the parasite responsible for whirling disease in salmonids, has since spread across the country causing severe declines in wild trout populations in the intermountain west. Recent development of risk assessment models used to assess the likelihood and consequences of exotic parasite...
Over-winter growth of juvenile salmonids may be linked to ocean survival and thus species persistence. Diet, growth, and prey available to juvenile coho, Oncorhynchus kisutch, were examined from December 2004 to April 2005 in four tributaries of the West Fork Smith River (WFSR), Oregon. Juvenile coho growth rate and condition...
Recent studies suggest that competition from brook trout (Salvelinus fontinalis; EBT) may have negative effects (e.g. displacement) on Lahontan cutthroat trout (Oncorhynchus clarki henshawi; LCT). Results from these studies have failed to elucidate the responsible mechanisms and have not examined if changing environmental conditions result in competitive/subordinate role reversals. The...
Giant otters (Pteronura brasiliensis) and humans in the Lower Yasuní Basin (Ecuador) have similar food and space requirements: they consume comparable arrays of fish species, and they use similar aquatic and terrestrial habitats. Resource partitioning could facilitate coexistence by allowing each species exclusive access to some resources.
My research examines...
The Steller Sea Lion Research Initiative was passed in 2001 to provide funding to help scientists determine causes and solutions for the population crash of Steller sea lions (Eumetopias jubatus). In response to need to understand population dynamics of Steller sea lions, NOAA Fisheries has spearheaded a large-scale, range-wide research...
This thesis provides the first general description of the natural variation in age
structure, growth rates, and survival in headwater populations of coastal cutthroat
trout Oncorhynchus clarkii clarkii from western Oregon, and a subsequent
synthesis of these life-history characteristics across the range of the subspecies.
Age, growth, and survival were...
For many species of marine turtle the characteristics that define pelagic habitat have yet to be fully identified. A better understanding of these habitat characteristics is critical to reduce high seas fisheries interactions with turtles, especially as the status of many turtle populations has placed them on the threatened or...
Vegetation provides food for many insects, and many insects serve as food for bats. We investigated the linkages among these three trophic levels in riparian areas throughout the Oregon Coast Range by examining the influence of vegetation cover, composition, and structure on the activity of nocturnal insects and bats, the...
I studied developmental rates in a suite of temperate and tropical passerine bird species from the New World to test the hypothesis that tropical passerines exhibit slower patterns of growth and development than temperate birds. I also investigated how the expression of several developmental rates varied with life history traits...
The extent to which responses to stress are maladaptive or adaptive to the long-term survival of fish remains to be better understood. The aim of this study was to identify differentially expressed genes in the livers of rainbow trout, Oncorhynchus mykiss, responding to an experimental stressor. Gene expression responses were...
Recently, there has been concern over the decline of the Pacific lamprey, Lampetra tridentata, in the northwestern United States. However, effective management has been impeded by data gaps in basic biology, especially in the early life stages. Consequently, in 2004 and 2005 I examined reproductive ecology, larval recruitment, and lamprey...
Low reproductive success has been typical of high elevation populations of the Hawaiian goose (Branta sandvicensis) or nēnē. Researchers identified predation and inadequate nutrition as limiting factors. Reproductive success remained low in most years despite on-going predator control programs. I used a supplemental feeding program over two breeding seasons in...
Larval transport and retention of two endangered suckers were studied in a highly
altered lacustrine/riverine complex. The endangered populations of Lost River sucker,
Deltistes luxatus, and shortnose sucker, Chasmistes brevirostris, in Upper Klamath Lake
(UKL), Oregon are the largest remnant populations of these suckers. Downstream of
UKL, the Keno Impoundment...
Riparian areas in the Pacific Northwest provide important biotic and abiotic
features, such as down wood, moist microsites, and abundant invertebrate prey that
benefit aquatic and terrestrial amphibians. Reported high densities of amphibians from
streams and riparian areas in the Pacific Northwest highlight their importance in riparian
food webs. Amphibians...
Pygmy rabbits (Brachylagus idahoensis) in Oregon and Washington are a sagebrush (Artemisia tridentata spp.) obligate species of concern because of declining populations and extirpation from much of their range. Efforts are underway to establish a captive bred population of the Columbia Basin pygmy rabbit in Washington state for reintroduction into...
Chinook salmon (Oncorhynchus tshawytscha) display the greatest variability of return times to freshwater of all Pacific salmon. Differential return times to freshwater have segregated populations of Chinook into two broad types or runs, fall and spring, named for the time of year in which they migrate to freshwater. Migration time...
Historically, least terns (Sterna antillarum) were one of the most common tern species in North America. However, population declines have resulted from direct and indirect anthropogenic pressures on their breeding and foraging habitat. Three subspecies of least terns have been described within the United States: California least tern (S. a....
Lahontan cutthroat trout (LCT) (Oncorhynchus clarki henshawi) are currently limited in their distribution to a patchwork of small isolated populations, the result of habitat degradation and natural variation in landscape and in-stream conditions. The objectives of this study were to determine how landscape level topographic features influence LCT distribution patterns....