Index Catalog // ScholarsArchive@OSU

Development and Application of Tools for Genetic Analysis of Clonal Populations

Creator:: Kamvar, Zhian N.
Abstract:: Research on the population genetics of microbial organisms requires the use of specialized analyses designed for clonal organisms to avoid violating the assumptions of traditional population genetic models. The tools necessary for performing these analyses existed as a set of unrelated software with non-overlapping capabilities and did not cover all...
Resource Type:: Dissertation
Full Text:: AN ABSTRACT OF THE DISSERTATION OF Zhian N. Kamvar for

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

Creator:: Schmickl, Roswitha, Liston, Aaron, Zeisek, Vojtěch, Oberlander, Kenneth, Weitemier, Kevin, Straub, Shannon C. K., Cronn, Richard C., Dreyer, Léanne L., and Suda, Jan
Abstract:: Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low‐copy nuclear (LCN) loci for phylogenetics in nonmodel organisms, we created an automated and interactive script to...
Resource Type:: Article
Full Text:: ://github.com/V-Z/sondovac/wiki/) and licensed under open-source license GPL v.3 allowing further modifications

Genomic Resources for Phylogenetics, Species Delimitation, and Geographic Localization of Neotropical Tree Species Cedrela odorata L. (Meliaceae)

Creator:: Finch, Kristen N.
Abstract:: Biodiversity loss is of global concern, and is due in part to deforestation and high consumer demand for wood and wood products. The neotropical tree species Cedrela odorata (“Spanish cedar” or “cedro”) is economically valuable for its wood and faces threats of overexploitation. Due to strong similarities in wood features...
Resource Type:: Dissertation
Full Text:: AN ABSTRACT OF THE DISSERTATION OF Kristen N

Hybridization between Castilleja levisecta and C. hispida : Implications for Pacific Northwest Prairie Management

Creator:: Sandlin, Isaac J., III
Abstract:: Conservation conflicts may develop on restoration sites with multiple species recovery objectives. For example, on Pacific Northwest prairies, the co-planting of the diploid cytotype of the common native wildflower Castilleja hispida with the endangered wildflower C. levisecta has resulted in putative Castilleja hybrids on restoration sites, prompting fears that genetic...
Resource Type:: Masters Thesis
Full Text:: : ______________________________________________________ Thomas N. Kaye Conservation conflicts may develop on restoration sites with multiple

Using local climate to explain temporal variation in rare plant populations

Creator:: Pfingsten, Ian A.
Abstract:: Increased temperatures due to anthropogenic-induced climate change may raise the threat of extinction for taxa with sessile life histories (e.g., plants) in the near future. Linking climate change models to demographic models may provide useful insights into the potential effects of environmental changes on rare plants, and therefore aid in...
Resource Type:: Masters Thesis
Full Text:: : _______________________________________ Thomas N. Kaye Increased temperatures due to anthropogenic-induced climate change may raise

Decadal Changes in Lichen and Vegetation Communities in Relation to Metal Deposition and Climate in Northern Alaska

Creator:: Di Meglio, Elisa B.
Abstract:: The Red Dog Mine transports concentrated zinc and lead ore in northwestern Alaska through Cape Krusenstern National monument along a haul road. High metal levels in the moss Hylocomium splendens along the haul road have been attributed to ore dust released during transport. The mine has implemented several pollution abatement...
Resource Type:: Masters Thesis
Full Text:: 200 400 600 800 1000 1200 0 200 400 600 800 1000 1200 2 0 1 7 Z n ( p p m ) 2006 Zn (ppm

Conservation genetics of Kincaid's lupine : a threatened plant of western Oregon and southwest Washington grasslands

Creator:: Severns, Paul M.
Abstract:: Kincaid's lupine (Lupinus oreganus Heller) is a federally listed threatened species native to remnant grassland of western Oregon and southwestern Washington, and is the primary larval host plant of a once thought extinct butterfly, Plebejus icarioides fenderi Macy. Past studies concerning Kincaid's lupine reproduction suggested that populations may suffer reductions...
Resource Type:: Dissertation
Full Text:: of cpDNA haplotypes in the Office population (n = 7 individuals, black bars) and the surviving

Effect of iron on biological control of fire blight by Pseudomonas fluorescens A506

Creator:: Temple, Todd N.
Abstract:: Competitive exclusion has been the mechanism hypothesized to account for the biological control of fire blight disease of pear and apple by the bacterium Pseudomonas fluorescens A506 (A506). Recent laboratory assays demonstrated, however, that A506 produces an antibiotic that is toxic to the fire blight pathogen, Erwinia amylovora, when cultured...
Resource Type:: Masters Thesis
Full Text:: AN ABSTRACT OF THE THESIS OF Todd N. Temple for the degree of

Evaluation of hop (Humulus lupulus L.) protoplast inoculation with Prunus necrotic ringspot virus

Creator:: Jochimsen, Kenneth N.
Abstract:: Hop tissue (Humulus lupulus L.) was grown in vitro in callus, suspension, and protoplast cultures. Medium components were evaluated for optimal callus growth. Solid Murashige and Skoog (MS) medium with picloram at 1.5 uM, 6-benzylaminopurine (BAP) at 10 uM, 1 g/1 casein hydrolysate, and 100 mg/1 citric acid induced white,...
Resource Type:: Masters Thesis
Full Text:: inoculation with Prunus necrotic ringspot virus AN ABSTRACT OF THE THESIS OF Kenneth N. aochimsen for the

Characterization of fungal and bacterial communities associated with mat-forming ectomycorrhizal fungi from old-growth stands in the H.J. Andrews Experimental Forest

Creator:: Hesse, Cedar N.
Abstract:: Mat-forming ectomycorrhizal (EcM) fungi represent a prevalent constituent of many temperate forest ecosystems and create dramatic changes in soil structure and chemistry. EcM mat soil have been shown to have increased microbial respiration rates and have been hypothesized to harbor unique assemblages of fungi and bacteria. The objectives of this...
Resource Type:: Dissertation
Full Text:: AN ABSTRACT OF THE DISSERTATION OF Cedar N. Hesse for the degree of Doctor of Philosophy in

ScholarsArchive@OSU

Development and Application of Tools for Genetic Analysis of Clonal Populations

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

Genomic Resources for Phylogenetics, Species Delimitation, and Geographic Localization of Neotropical Tree Species Cedrela odorata L. (Meliaceae)

Hybridization between Castilleja levisecta and C. hispida : Implications for Pacific Northwest Prairie Management

Using local climate to explain temporal variation in rare plant populations

Decadal Changes in Lichen and Vegetation Communities in Relation to Metal Deposition and Climate in Northern Alaska

Conservation genetics of Kincaid's lupine : a threatened plant of western Oregon and southwest Washington grasslands

Effect of iron on biological control of fire blight by Pseudomonas fluorescens A506

Evaluation of hop (Humulus lupulus L.) protoplast inoculation with Prunus necrotic ringspot virus

Characterization of fungal and bacterial communities associated with mat-forming ectomycorrhizal fungi from old-growth stands in the H.J. Andrews Experimental Forest

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