Index Catalog // ScholarsArchive@OSU

Dissecting a Hidden Gene Duplication: The Arabidopsis thaliana SEC10 Locus

Creator:: Vukašinović, Nemanja, Cvrčková, Fatima, Eliáš, Marek, Cole, Rex A., Fowler, John E., Žárský, Viktor, and Synek, Lukáš
Abstract:: Repetitive sequences present a challenge for genome sequence assembly, and highly similar segmental duplications may disappear from assembled genome sequences. Having found a surprising lack of observable phenotypic deviations and non-Mendelian segregation in Arabidopsis thaliana mutants in SEC10, a gene encoding a core subunit of the exocyst tethering complex, we...
Resource Type:: Article

The Willamette Valley (Oregon) Prairie Plant Trait Dataset

Creator:: Clark, Deborah and Wilson, Mark V.
Abstract:: The Willamette Valley (Oregon) Prairie Plant Trait Dataset is a compilation of plant traits of species important in upland prairies, wetland prairies, vernal pools, and emergent wetlands, and in the restoration of prairies and wetlands of the Willamette Valley of Oregon. These species are also found widely throughout the Pacific...
Resource Type:: Dataset
Full Text:: Grime, J.P. (eds) 1993. Methods in Comparative Plant Ecology: A Laboratory Manual. Chapman and Hall

RNA-Seq analysis of early infected potato leaves by potato virus Y in resistant and susceptible potato varieties

Creator:: Goyer, Aymeric, Hamlin, Launa, Crosslin, James M., Buchanan, Alex, and Chang, Jeff H.
Abstract:: Background Potato Virus Y (PVY) is one of the most important plant viruses affecting potato production. The interactions between potato and PVY are complex and the outcome of the interactions depends on the potato genotype, the PVY strain, and the environmental conditions. A potato cultivar can induce resistance to a...
Resource Type:: Article
Full Text:: Research and Extension Center, Hermiston, OR, USA Full list of author information is available at the end

Development of Computational, Visualization, and Molecular Tools for Fungal and Oomycete Community Ecology

Creator:: Foster, Zachary Stephen Longiaru
Abstract:: Oomycetes are an important group of organisms with a variety of ecological roles similar to fungi. Although many are well-studied plant pathogens known for their devastating effects on agricultural systems, most are little-studied saprobes and parasites of plants and animals in nearly every ecosystem on earth. The advent of affordable...
Resource Type:: Dissertation
Full Text:: , methodology, project administra- tion, software, and writing. Chapter 3: Metacoder: An R package for

Finding Our Way through Phenotypes

Creator:: Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Lauren D., Courtot, Mélanie, Csösz, Sándor, Cul, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettal, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., and Mabee, Paula
Abstract:: Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across...
Resource Type:: Article
Full Text:: National Lab, Berkeley, California, United States of America, 3 Department of Plant Biology, Carnegie

Fire and Grazing Influence Site Resistance to Bromus tectorum Through Their Effects on Shrub, Bunchgrass and Biocrust Communities in the Great Basin (USA)

Creator:: Condon, Lea A. and Pyke, David A.
Abstract:: Shrubs, bunchgrasses and biological soil crusts (biocrusts) are believed to contribute to site resistance to plant invasions in the presence of cattle grazing. Although fire is a concomitant disturbance with grazing, little is known regarding their combined impacts on invasion resistance. We are the first to date to test the...
Resource Type:: Article
Full Text:: % of Eurasia and 3% of North America (West 1983a). Grazing has likely reduced fire size in western

Inferring Patterns and Processes of Emergence in Clonal Phytophthora Epidemics using Population Genomic Approaches

Creator:: Cauldron, Nicholas C.
Abstract:: Oomycete and fungal pathogens threaten food, fiber, and forests around the world. With climate change, these pathogens are expected to emerge more frequently. Evolution can facilitate their emergence through mechanisms such as mutations that change or expand host range. Characterizing evolutionary mechanisms in plant pathogens will contribute to our ability...
Resource Type:: Dissertation
Full Text:: Chapters 2, 3, 4, 5. Valerie J. Fieland assisted with data collection, species identification, and other

ScholarsArchive@OSU

Dissecting a Hidden Gene Duplication: The Arabidopsis thaliana SEC10 Locus

The Willamette Valley (Oregon) Prairie Plant Trait Dataset

RNA-Seq analysis of early infected potato leaves by potato virus Y in resistant and susceptible potato varieties

Development of Computational, Visualization, and Molecular Tools for Fungal and Oomycete Community Ecology

Finding Our Way through Phenotypes

Fire and Grazing Influence Site Resistance to Bromus tectorum Through Their Effects on Shrub, Bunchgrass and Biocrust Communities in the Great Basin (USA)

Inferring Patterns and Processes of Emergence in Clonal Phytophthora Epidemics using Population Genomic Approaches

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