Index Catalog // ScholarsArchive@OSU

Sclerotinia Wilt of Hop (Humulus lupulus) Caused by Sclerotinia sclerotiorum in the Pacific Northwest United States

Creator:: Kropf, S. M., Putnam, M. L., Serdani, M., Twomey, M. C., Woods, J. L., and Gent, D. H.
Abstract:: In June 2009, wilted hop bines were observed in a yard in Marion County, OR. The wilt was associated with a stem rot that occurred ∽1 m from the ground near the point where bines are tied together for horticultural purposes. Samples of affected stems were submitted to the Oregon...
Resource Type:: Article

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Creator:: Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., II, Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., El Jaziri, Mondher, Loper, Joyce E., Mahmud, Taifo, and Chang, Jeff H.
Abstract:: Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus, some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with...
Resource Type:: Article

Taxonomic Clarification of Lupinus oreganus and Lupinus biddlei in the Pacific Northwest, USA

Creator:: Severns, Paul M., Meyers, Stephen C., and Tran, Tri
Abstract:: Through a phylogenetic study Using LECCYCIA nucleotide sequences and a survey of historical Botanical literature, we propose clarifications in the nomenclature of Lupinus oreganus and Lupinus biddlei. The former taxon has been incorrectly classified as Lupinus sulphurcus ssp. kincaidii and recently as L. oreganus var. kincaidii. The latter has recently...
Resource Type:: Article
Full Text:: CLARIFICATION OF LUPINUS OREGANUS AND LUPINUS BIDDLEI IN THE PACIFIC NORTHWEST, USA Paul M. Severns1, Stephen C

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: , Pierre J. G. M. de Wit14, Shaobin Zhong15, Stephen B. Goodwin16, Igor V. Grigoriev1* 1 United States

Stand Structures of Oregon White Oak Woodlands, Regeneration, and Their Relationships to the Environment in Southwestern Oregon

Creator:: Gilligan, Laurie A. and Muir, Patricia S.
Abstract:: Although Oregon white oak (Quercus garryana) woodlands are a characteristic landscape component in southwestern Oregon, little is known about their current or historical stand structures. Meanwhile, fuel reduction thinning treatments that change stand structures in non-coniferous communities are ongoing and widespread on public lands in this region; some of these...
Resource Type:: Article
Full Text:: sapling-sized oak trees (<10 cm diameter at breast height, 1.3 m tall) was generally low and their ages

An Extension of the Plant Ontology Project Supporting Wood Anatomy and Development Research

Creator:: Lens, Frederic, Cooper, Laurel, Gandolfo, Maria Alejandra, Groover, Andrew, Jaiswal, Pankaj, Lachenbruch, Barbara, Spicer, Rachel, Staton, Margaret E., Stevenson, Dennis W., Walls, Ramona L., and Wegrzyn, Jill
Abstract:: A wealth of information on plant anatomy and morphology is available in the current and historical literature, and molecular biologists are producing massive amounts of transcriptome and genome data that can be used to gain better insights into the development, evolution, ecology, and physiological function of plant anatomical attributes. Integrating...
Resource Type:: Article
Full Text:: , DW Stevenson). REFERENCES: Agusti, J., R. Lichtenberger, M. Schwarz, L. Nehlin & T. Greb. 2011

Gramene database in 2010: updates and extensions

Creator:: Youens-Clark, Ken, Buckler, Ed, Casstevens, Terry, Chen, Charles, DeClerck, Genevieve, Derwent, Paul, Dharmawardhana, Palitha, Jaiswal, Pankaj, Kersey, Paul, Karthikeyan, A. S., Lu, Jerry, McCouch, Susan R., Ren, Liya, Spooner, William, Stein, Joshua C., Thomason, Jim, Wei, Sharon, and Ware, Doreen
Abstract:: Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with...
Resource Type:: Article
Full Text:: ., Schaeffer,M. et al. (2005) Plant Ontology (PO): a controlled vocabulary of plant structures and growth

The Gene Ontology in 2010: extensions and refinements

Creator:: Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
Abstract:: The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
Resource Type:: Article
Full Text:: interest statement. None declared. REFERENCES 1. Torto-Alalibo,T., Collmer,C.W. and Gwinn-Giglio,M. (2009

Taking the Next Step: Building an Arabidopsis Information Portal

Creator:: International Arabidopsis Informatics Consortium, Bastow, Ruth, Beynon, Jim, Brendel, Volker, Dooley, Rion, Friesner, Joanna, Grotewold, Erich, Huala, Eva, Loraine, Ann, Meyers, Blake, Pires, J. Chris, Provart, Nicholas, Stanzione, Dan, Town, Chris, and Ware, Doreen
Abstract:: The Arabidopsis Information Portal (AIP), a resource expected to provide access to all community data and combine outputs into a single user-friendly interface, has emerged from community discussions over the last 23 months. These discussions began during two closely linked workshops in early 2010 that established the International Arabidopsis Informatics...
Resource Type:: Article
Full Text:: , M., et al.; The Gene Ontology Con- sortium. (2000). Gene Ontology: Tool for the unification of

Genome-wide profiling of Populus small RNAs

Creator:: Klevebring, Daniel, Street, Nathaniel R., Fahlgren, Noah, Kasschau, Krisitin D., Carrington, James C., Lundeberg, Joakim, and Jansson, Stefan
Abstract:: Background: Short RNAs, and in particular microRNAs, are important regulators of gene expression both within defined regulatory pathways and at the epigenetic scale. We investigated the short RNA (sRNA) population (18-24 nt) of the transcriptome of green leaves from the sequenced Populus trichocarpa using a concatenation strategy in combination with...
Resource Type:: Article

ScholarsArchive@OSU

Sclerotinia Wilt of Hop (Humulus lupulus) Caused by Sclerotinia sclerotiorum in the Pacific Northwest United States

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

Taxonomic Clarification of Lupinus oreganus and Lupinus biddlei in the Pacific Northwest, USA

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Stand Structures of Oregon White Oak Woodlands, Regeneration, and Their Relationships to the Environment in Southwestern Oregon

An Extension of the Plant Ontology Project Supporting Wood Anatomy and Development Research

Gramene database in 2010: updates and extensions

The Gene Ontology in 2010: extensions and refinements

Taking the Next Step: Building an Arabidopsis Information Portal

Genome-wide profiling of Populus small RNAs

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