Index Catalog // ScholarsArchive@OSU

The Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid inhibits growth of Erwinia amylovora and acts as a seed germination-arrest factor

Creator:: Lee, Xiaoyun, Azevedo, Mark D., Armstrong, Donald J., Banowetz, Gary M., and Reimmann, Cornelia
Abstract:: The Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid (AMB) shares biological activities with 4-formylaminooxyvinylglycine, a related molecule produced by Pseudomonas fluorescens WH6. We found that culture filtrates of a P.aeruginosa strain overproducing AMB weakly interfered with seed germination of the grassy weed Poa annua and strongly inhibited growth of Erwinia amylovora, the...
Resource Type:: Article
Full Text:: antimetabolite L-2-Amino-4-methoxy-trans-3- butenoic acid. J Bacteriol 192: 4251–4255. Lee, X., Reimmann, C

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Creator:: Schroeder, Hilke, Cronn, Richard, Yanbaev, Yulai, Jennings, Tara, Mader, Malte, Degen, Bernd, and Kersten, Birgit
Abstract:: To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Resource Type:: Article
Full Text:: – 166. doi: 10.3732/ajb.92.1.142 PMID: 21652394 37. DongW Liu J, Yu J, Wang L, Zhou S. Highly variable

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

Creator:: Parks, Matthew, Cronn, Richard, and Liston, Aaron
Abstract:: Background: Through next-generation sequencing, the amount of sequence data potentially available for phylogenetic analyses has increased exponentially in recent years. Simultaneously, the risk of incorporating ‘noisy’ data with misleading phylogenetic signal has also increased, and may disproportionately influence the topology of weakly supported nodes and lineages featuring rapid radiations and/or...
Resource Type:: Article
Full Text:: the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae) Parks et al. BMC

Thauera butanivorans sp. nov., a C₂–C₉ alkane-oxidizing bacterium previously referred to as ‘Pseudomonas butanovora’

Creator:: Dubbels, Bradley L., Sayavedra-Soto, Luis A., Bottomley, Peter J., and Arp, Daniel J.
Abstract:: The placement of ‘Pseudomonas butanovora’ in the genus Thauera was proposed previously, based on 16S rRNA gene sequence analysis, upon further studies of taxonomical characteristics. In this study, physiological characteristics and DNA–DNA reassociation data are presented and the transfer of ‘P. butanovora’ to the genus Thauera is proposed. The original...
Resource Type:: Article
Full Text:: , 1173–1180. Dubbels, B. L., Sayavedra-Soto, L. A. & Arp, D. J. (2007). Butane monooxygenase of

D-Lactate metabolism and the obligate requirement for CO2 during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensis

Creator:: Starkenburg, Shawn R., Arp, Daniel J., and Bottomley, Peter J.
Abstract:: Nitrobacter hamburgensis X14 is a facultative lithoautotroph that conserves energy from the oxidation of nitrite (NO 2 ) and fixes carbon dioxide (CO2) as its sole source of carbon. The availability of the N. hamburgensis X14 genome sequence initiated a re-examination of its mixotrophic and organotrophic potential, as genes encoding...
Resource Type:: Article
Full Text:: organisms. In Variations in Autotrophic Life, pp. 171–200. Edited by J. M. Shively and L. L. Barton. San

Genome sequences of Phytophthora enable translational plant disease management and accelerate research

Creator:: Grünwald, Niklaus J.
Abstract:: Des séquences entières ou partielles de génomes deviennent de plus en plus accessibles. En ce qui concerne plusieurs systèmes plante-agent pathogène, nous abordons l’ère du recéquençage du génome. Les premiers génomes de Phytophthora, P. ramorum et P. sojae, ont été disponibles à partir de 2004, suivis de près par celui...
Resource Type:: Article
Full Text:: disease management and accelerate research Can. J. Plant Pathol. (2012), 34(1): 13–19 Symposium

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum

Creator:: Kimbrel, Jeffrey A., Thomas, William J., Jiang, Yuan, Creason, Allison L., Thireault, Caitlin A., Sachs, Joel L., and Chang, Jeff H.
Abstract:: Two diametric paradigms have been proposed to model the molecular co-evolution of microbial mutualists and their eukaryotic hosts. In one, mutualist and host exhibit an antagonistic arms race and each partner evolves rapidly to maximize their own fitness from the interaction at potential expense of the other. In the opposing...
Resource Type:: Article
Full Text:: Interactions 15: 1228–1235. 17. Zhang L, Chen X-J, Lu

Sclerotinia Wilt of Hop (Humulus lupulus) Caused by Sclerotinia sclerotiorum in the Pacific Northwest United States

Creator:: Kropf, S. M., Putnam, M. L., Serdani, M., Twomey, M. C., Woods, J. L., and Gent, D. H.
Abstract:: In June 2009, wilted hop bines were observed in a yard in Marion County, OR. The wilt was associated with a stem rot that occurred ∽1 m from the ground near the point where bines are tied together for horticultural purposes. Samples of affected stems were submitted to the Oregon...
Resource Type:: Article

Kinetic characterization of the soluble butane monooxygenase from Thauera butanivorans, formerly ‘Pseudomonas butanovora’

Creator:: Cooley, Richard B., Dubbels, Bradley L., Sayavedra-Soto, Luis A., Bottomley, Peter J., and Arp, Daniel J.
Abstract:: Soluble butane monooxygenase (sBMO), a three-component di-iron monooxygenase complex expressed by the C2–C9 alkane-utilizing bacterium Thauera butanivorans, was kinetically characterized by measuring substrate specificities for C1–C5 alkanes and product inhibition profiles. sBMO has high sequence homology with soluble methane monooxygenase (sMMO) and shares a similar substrate range, including gaseous and...
Resource Type:: Article
Full Text:: , C. J., Sayavedra-Soto, L. A., Arp, D. J. & Bottomley, P. J. (2007). Propionate inactivation of

A ranunculalean liana stem from the cretaceous of British Columbia, Canada: Atli morinii gen. et sp nov.

Creator:: Smith, Selena Y., Little, Stefan A., Cooper, Ranessa L., Burnham, Robyn J., and Stockey, Ruth A.
Abstract:: Premise of research. The lianoid habit is found in 125 extant plant families and is most diverse and abundant in structurally complex forests, such as tropical forests. A stem with lianoid anatomy is described from Cretaceous sediments of Hornby Island, British Columbia. Methodology. The stem segment, 2.5 cm in diameter...
Resource Type:: Article
Full Text:: GEN. ET SP. NOV. Selena Y. Smith,1,*,† Stefan A. Little,‡,§ Ranessa L. Cooper,k Robyn J. Burnham

ScholarsArchive@OSU

The Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid inhibits growth of Erwinia amylovora and acts as a seed germination-arrest factor

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

Thauera butanivorans sp. nov., a C₂–C₉ alkane-oxidizing bacterium previously referred to as ‘Pseudomonas butanovora’

D-Lactate metabolism and the obligate requirement for CO2 during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensis

Genome sequences of Phytophthora enable translational plant disease management and accelerate research

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum

Sclerotinia Wilt of Hop (Humulus lupulus) Caused by Sclerotinia sclerotiorum in the Pacific Northwest United States

Kinetic characterization of the soluble butane monooxygenase from Thauera butanivorans, formerly ‘Pseudomonas butanovora’

A ranunculalean liana stem from the cretaceous of British Columbia, Canada: Atli morinii gen. et sp nov.

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