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Filtering by: Alternative title ssim Circular of information no. 254 Remove constraint Alternative title ssim: Circular of information no. 254 Academic Affiliation Botany and Plant Pathology Remove constraint Academic Affiliation: Botany and Plant Pathology Resource Type Article Remove constraint Resource Type: Article

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Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:

Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.

Abstract:

We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...

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composing the pan-genome of the P. fluorescens group, 5798 have no orthologs in other genomes of
Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:

Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.

Abstract:

We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...

Resource Type:

Article

Full Text:

composing the pan-genome of the P. fluorescens group, 5798 have no orthologs in other genomes of
A Phylogenetic Perspective on the Individual Species- Area Relationship in Temperate and Tropical Tree Communities

Creator:

Yang, Jie, Swenson, Nathan G., Cao, Min, Chuyong, George B., Ewango, Corneille E. N., Howe, Robert, Kenfack, David, Thomas, Duncan, Wolf, Amy, and Lin, Luxiang

Abstract:

Ecologists have historically used species-area relationships (SARs) as a tool to understand the spatial distribution of species. Recent work has extended SARs to focus on individual-level distributions to generate individual species area relationships (ISARs). The ISAR approach quantifies whether individuals of a species tend have more or less species richness...

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had no role in study design, data collection and analysis, decision to publish, or preparation of the
Pararaucaria carrii sp nov., anatomically preserved evidence for the conifer family cheirolepidiaceae in the northern hemisphere

Creator:

Stockey, Ruth A. and Rothwell, Gar W.

Abstract:

A cylindrical permineralized conifer seed cone has been identified from the Officer Member of the Trowbridge Formation, near Izee, in east-central Oregon. The cone is preserved in a Middle Jurassic (Callovian) marine calcium carbonate concretion, associated with araucarian seed cones, conifer twigs and wood, cycad seeds, fern rachides, and lycopodialean...

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information technology and tools to increase productivity and facilitate new forms of scholarship. For more
Phenotypic Plasticity of the Hydrasperman Seed Fern Tetrastichia bupatides Gordon (Lyginopteridaceae)

Creator:

Dunn, Michael T. and Rothwell, Gar W.

Abstract:

Fifty-nine stems of Tetrastichia bupatides, numerous frond segments, and roots from Oxroad Bay, Scotland, have recently been analyzed. They reveal that many characters originally used to describe this species exhibit a wider range of variation than previously suspected. These data suggest that ribs of the protostele are most commonly four...

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oldhamia, which is known from the sum of its parts (Oliver and Scott 1904; Scott 1908), no other
A ranunculalean liana stem from the cretaceous of British Columbia, Canada: Atli morinii gen. et sp nov.

Creator:

Smith, Selena Y., Little, Stefan A., Cooper, Ranessa L., Burnham, Robyn J., and Stockey, Ruth A.

Abstract:

Premise of research. The lianoid habit is found in 125 extant plant families and is most diverse and abundant in structurally complex forests, such as tropical forests. A stem with lianoid anatomy is described from Cretaceous sediments of Hornby Island, British Columbia. Methodology. The stem segment, 2.5 cm in diameter...

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levels, while other experiments show no difference in growth rates of trees versus lianas (Zotz et al
The Seed Cone Eathiestrobus gen. nov.: Fossil Evidence for a Jurassic Origin of Pinaceae

Creator:

Rothwell, Gar W., Mapes, Gene, Stockey, Ruth A., and Hilton, Jason

Abstract:

Premise of the study: Pinaceae and nonpinoid species are sister groups within the conifer clade as inferred from molecular systematic comparisons of living species and therefore should have comparable geological ages. However, the fossil record for the nonpinoid lineage of extant conifer families is Triassic, nearly 100 million years older...

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extinct species that provide information about the evolu- tion of crown group morphologies and anatomy
Diversity of ancient conifers: The jurassic seed cone bancroftiastrobus digitata gen. et sp. nov. (coniferales)

Creator:

Rothwell, Gar W., Mapes, Gene, Stockey, Ruth A., and Hilton, Jason

Abstract:

Premise of research. A third genus of anatomically preserved conifer seed cones has been recognized from a Late Jurassic deposit in northeastern Scotland. This cone is described as Bancroftiastrobus digitata Rothwell, Mapes, Stockey et Hilton. Methodology. The cone was sectioned with the classic coal ball peel technique and studied and...

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Mapes, Ruth A. Stockey, and Jason Hilton Source: International Journal of Plant Sciences, Vol. 174, No
How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

Creator:

Parmentier, Ingrid, Duminil, Jérôme, Kuzmina, Maria, Philippe, Morgane, Thomas, Duncan W., Kenfack, David, Chuyong, George B., Cruaud, Corinne, and Hardy, Olivier J.

Abstract:

Background: DNA barcoding of rain forest trees could potentially help biologists identify species and discover new ones. However, DNA barcodes cannot always distinguish between closely related species, and the size and completeness of barcode databases are key parameters for their successful application. We test the ability of rbcL, matK and...

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://www.ncbi.nlm.nih.gov/genbank/), but only for a small proportion of the flora: there is no regional-scale barcode
Bioclimatic, ecological, and phenotypic intermediacy and high genetic admixture in a natural hybrid of octoploid strawberries

Creator:

Salamone, Isabella, Govindarajulu, Rajanikanth, Falk, Stacey, Parks, Matthew, Liston, Aaron, and Ashnam, Tia-Lynn

Abstract:

Premise of the Study: Hybrid zones provide "natural laboratories" for understanding the processes of selection, reinforcement, and speciation. We sought to gain insight into the degree of introgression and the extent of ecological-phenotypic intermediacy in the natural hybrid strawberry, Fragaria x ananassa subsp. cuneifolia. Methods: We used whole-plastome sequencing to...

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), which makes the two species diffi cult to distinguish in the absence of ploidy information, none of

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Academic Affiliation

Botany and Plant Pathology[remove]30
College of Science2

Creator

Liston, Aaron4
Rothwell, Gar W.4
Stockey, Ruth A.4
Davis, Edward W., Ii3
Hassan, Karl A.3
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Date

Date range begin – Date range end

Current results range from 2010 to 2023

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Decade

2020-20292
2010-201928

Language

English [eng]30

License

Attribution 3.0 United States2
CC0 1.0 Universal2
All rights reserved1
Attribution 4.0 (CC BY 4.0)1
Attribution-NonCommercial-NoDerivatives 4.0 (CC BY-NC-ND 4.0)1

Location

Willamette Valley, Multnomah County, Oregon, United States2

Non-Academic Affiliation

Oregon State University. Agricultural Experiment Station1
Oregon State University. Center for Genome Research and Biocomputing1

Peer Reviewed

Yes27

Resource Type

Article[remove]30

Rights Statement

Copyright Not Evaluated16
In Copyright12
No Copyright - United States2

Subject

Conservation2
Habitat management2
Habitat restoration2
Native prairie2
Native species2
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