Index Catalog // ScholarsArchive@OSU

Phylogeny and Biogeography of Primula sect. Parryi (Primulaceae)

Creator:: Kelso, Sylvia, Beardsley, Paul M., and Weitemier, Kevin
Abstract:: Primula sect. Parryi comprises five species endemic to western North America: P. parryi, P. angustifolia, P. rusbyi, P. capillaris, and P. cusickiana with four varieties. This section, derived from a clade with representatives in Asia and Europe, exemplifies a phytogeographic pattern in which a widespread species is accompanied by multiple...
Resource Type:: Article
Full Text:: ., & Weitemier, K. (2009). Phylogeny and biogeography of Primula sect. Parryi (Primulaceae). International

Phytophthora borealis and Phytophthora riparia, new species in Phytophthora ITS Clade 6

Creator:: Hansen, Everett M., Reeser, Paul W., and Sutton, Wendy
Abstract:: Phytophthora borealis and Phytophthora riparia, identified in recent Phytophthora surveys of forest streams in Oregon, California and Alaska, are described as new species in Phytophthora ITS Glade 6. They are similar in growth form and morphology to P. gonapodyides and are predominately sterile. They present unique DNA sequences, however, and...
Resource Type:: Article
Full Text:: species in Phytophthora ITS Clade 6 Everett M. Hansen1 Paul W. Reeser Wendy Sutton Department of Botany

Carbonyl Sulfide Inhibition of CO Dehydrogenase from Rhodospirillum rubrum

Creator:: Hyman, Michael R., Ensign, Scott A., Arp, Daniel J., and Ludden, Paul W.
Abstract:: Carbonyl sulfide (COS) has been investigated as a rapid-equilibrium inhibitor of CO oxidation by the CO dehydrogenase purified from Rhodospirillum rubrum. The kinetic evidence suggests that the inhibition by COS is largely competitive versus CO (Ki = 2.3 pM) and uncompetitive versus methylviologen as electron acceptor (Ki = 15.8 pM)....
Resource Type:: Article
Full Text:: . Biophys. Res. Commun. 90, 431-438. Griffin, T. A., Lau, K. S . , & Chuang, D. T. (1988) J . Biol

Taxonomic Clarification of Lupinus oreganus and Lupinus biddlei in the Pacific Northwest, USA

Creator:: Severns, Paul M., Meyers, Stephen C., and Tran, Tri
Abstract:: Through a phylogenetic study Using LECCYCIA nucleotide sequences and a survey of historical Botanical literature, we propose clarifications in the nomenclature of Lupinus oreganus and Lupinus biddlei. The former taxon has been incorrectly classified as Lupinus sulphurcus ssp. kincaidii and recently as L. oreganus var. kincaidii. The latter has recently...
Resource Type:: Article
Full Text:: CLARIFICATION OF LUPINUS OREGANUS AND LUPINUS BIDDLEI IN THE PACIFIC NORTHWEST, USA Paul M. Severns1, Stephen C

Vegetation Change from the Euro-American Settlement Era to the Present in Relation to Environment and Disturbance in Southwest Oregon

Creator:: Duren, Olivia C., Muir, Patricia S., and Hosten, Paul E.
Abstract:: Faced with landscapes degraded by fire suppression, logging, and grazing, land managers in the interior western US are attempting to restore habitat structure and function. In southwest Oregon, landscape-scale fuels treatments are being implemented with goals including recreating historic vegetation structure, despite poor understanding of the nature of the landscape...
Resource Type:: Article
Full Text:: , Corvallis, Oregon 97331 and Paul E. Hosten2, Bureau of Land Management, Medford District Office, 3040

Global net community production and the putative net heterotrophy of the oligotrophic oceans

Creator:: Westberry, Toby K., Williams, Peter J. le B., and Behrenfeld, Michael J.
Abstract:: Reconciling rates of organic carbon export from the euphotic zone with the consumption of organic material in the dark ocean remains one of the major quantitative uncertainties of the ocean carbon cycle. Euphotic zone net community production (NCP) provides one broad constraint on export flux and potential carbon drawdown. However,...
Resource Type:: Article
Full Text:: putative net heterotrophy of the oligotrophic oceans Toby K. Westberry,1 Peter J. le B. Williams,2 and

Gramene database in 2010: updates and extensions

Creator:: Youens-Clark, Ken, Buckler, Ed, Casstevens, Terry, Chen, Charles, DeClerck, Genevieve, Derwent, Paul, Dharmawardhana, Palitha, Jaiswal, Pankaj, Kersey, Paul, Karthikeyan, A. S., Lu, Jerry, McCouch, Susan R., Ren, Liya, Spooner, William, Stein, Joshua C., Thomason, Jim, Wei, Sharon, and Ware, Doreen
Abstract:: Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with...
Resource Type:: Article
Full Text:: database in 2010: updates and extensions Youens-Clark, K., Buckler, E., Casstevens, T., Chen, C., DeClerck

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

Creator:: Van Auken, Kimberly, Fey, Petra, Berardini, Tanya Z., Dodson, Robert, Cooper, Laurel, Li, Donghui, Chan, Juancarlos, Li, Yuling, Basu, Siddhartha, Muller, Hans-Michael, Chisholm, Rex, Huala, Eva, Sternberg, Paul W., and WormBase Consortium
Abstract:: WormBase, dictyBase and The Arabidopsis Information Resource (TAIR) are model organism databases containing information about Caenorhabditis elegans and other nematodes, the social amoeba Dictyostelium discoideum and related Dictyostelids and the flowering plant Arabidopsis thaliana, respectively. Each database curates multiple data types from the primary research literature. In this article, we...
Resource Type:: Article
Full Text:: , Yuling Li1, Siddhartha Basu2, Hans-Michael Muller1, Rex Chisholm2, Eva Huala3, Paul W. Sternberg1,5 and

The Gene Ontology in 2010: extensions and refinements

Creator:: Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
Abstract:: The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
Resource Type:: Article
Full Text:: Blatter, Lydie Bougueleret, Emmanuel Boutet, Lionel Breuza, Alan Bridge, Paul Browne, Wei Mun Chan

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

Creator:: Padamsee, Mahajabeen, Kumar, T. K. Arun, Riley, Robert, Binder, Manfred, Boyd, Alex, Calvo, Ana M., Furukawa, Kentaro, Hesse, Cedar, Hohmann, Stefan, James, Tim Y., LaButti, Kurt, Lapidus, Alla, Lindquist, Erika, Lucas, Susan, Miller, Kari, Shantappa, Sourabha, Grigoriev, Igor V., Hibbett, David S., McLaughlin, David J., Spatafora, Joseph W., and Aime, M. Catherine
Abstract:: Wallemia (Wallemiales, Wallemiomycetes) is a genus of xerophilic Fungi of uncertain phylogenetic position within Basidiomycota. Most commonly found as food contaminants, species of Wallemia have also been isolated from hypersaline environments. The ability to tolerate environments with reduced water activity is rare in Basidiomycota. We sequenced the genome of W....
Resource Type:: Article
Full Text:: 70803, United States bDepartment of Plant Biology, University of Minnesota, Saint Paul, MN 55108, United

ScholarsArchive@OSU

Phylogeny and Biogeography of Primula sect. Parryi (Primulaceae)

Phytophthora borealis and Phytophthora riparia, new species in Phytophthora ITS Clade 6

Carbonyl Sulfide Inhibition of CO Dehydrogenase from Rhodospirillum rubrum

Taxonomic Clarification of Lupinus oreganus and Lupinus biddlei in the Pacific Northwest, USA

Vegetation Change from the Euro-American Settlement Era to the Present in Relation to Environment and Disturbance in Southwest Oregon

Global net community production and the putative net heterotrophy of the oligotrophic oceans

Gramene database in 2010: updates and extensions

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

The Gene Ontology in 2010: extensions and refinements

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

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