Index Catalog // ScholarsArchive@OSU

The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

Creator:: Lim, Chee Kent, Hassan, Karl A., Tetu, Sasha G., Loper, Joyce E., and Paulsen, Ian T.
Abstract:: One of the most important micronutrients for bacterial growth is iron, whose bioavailability in soil is limited. Consequently, rhizospheric bacteria such as Pseudomonas fluorescens employ a range of mechanisms to acquire or compete for iron. We investigated the transcriptomic and proteomic effects of iron limitation on P. fluorescens Pf-5 by...
Resource Type:: Article
Full Text:: adjacent to or near genes encoding anti-sigma factors and TonB- dependent receptors that contain N

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Creator:: Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J., Manning, Viola A., Mankaney, Aakash N., Mockler, Todd C., and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis (Ptr), a necrotrophic fungus and the causal agent of tan spot of wheat, produces one or a combination of host-selective toxins (HSTs) necessary for disease development. The two most studied toxins produced by Ptr, Ptr ToxA (ToxA) and Ptr ToxB (ToxB), are proteins that cause necrotic or chlorotic...
Resource Type:: Article
Full Text:: Figueroa1,2, Larry J. Wilhelm1, Viola A. Manning1, Aakash N. Mankaney1, Todd C. Mockler1,3, Lynda M

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: Durkin6, Daniel A. Kluepfel7, W. Patrick Wechter8, Anne J. Anderson9, Young Cheol Kim10, Leland S

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: sc af fo ld s ar e g iv e n in T ab le S1 2 . d o i:1 0 .1 3 7 1 /j o u rn al .p p

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

Creator:: Condon, Bradford J., Leng, Yueqiang, Wu, Dongliang, Bushley, Kathryn E., Ohm, Robin A., Otillar, Robert, Martin, Joel, Schackwitz, Wendy, Grimwood, Jane, MohdZainudin, NurAinIzzati, Xue, Chunsheng, Wang, Rui, Manning, Viola A., Dhillon, Braham, Tu, Zheng Jin, Steffenson, Brian J., Salamov, Asaf, Sun, Hui, Lowry, Steve, LaButti, Kurt, Han, James, Copeland, Alex, Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Baker, Scott E., Ciuffetti, Lynda M., Grigoriev, Igor V., Zhong, Shaobin, and Turgeon, B. Gillian
Abstract:: The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary...
Resource Type:: Article
Full Text:: Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens Bradford J. Condon1., Yueqiang Leng2

Infection of Brachypodium distachyon by Formae Speciales of Puccinia graminis: Early Infection Events and Host-Pathogen Incompatibility

Creator:: Figueroa, Melania, Alderman, Stephen, Garvin, David F., and Pfender, William F.
Abstract:: Puccinia graminis causes stem rust, a serious disease of cereals and forage grasses. Important formae speciales of P. graminis and their typical hosts are P. graminis f. sp. tritici (Pg-tr) in wheat and barley, P. graminis f. sp. lolii (Pg-lo) in perennial ryegrass and tall fescue, and P. graminis f....
Resource Type:: Article
Full Text:: fertilized every 2 weeks with a pH- adjusted NPK solution (6 mg N, 5.4 mg P2O5 and 6 mg K2O in 4 L water

Risk of Exposure to Eastern Equine Encephalomyelitis Virus Increases with the Density of Northern Cardinals

Creator:: Estep, Laura K., McClure, Christopher J. W., Vander Kelen, Patrick, Burkett-Cadena, Nathan D., Sickerman, Stephen, Hernandez, José, Jinright, Joseph, Hunt, Brenda, Lusk, John, Hoover, Victor, Armstrong, Keith, Stark, Lillian M., Hill, Geoffrey E., and Unnasch, Thomas R.
Abstract:: For a variety of infectious diseases, the richness of the community of potential host species has emerged as an important factor in pathogen transmission, whereby a higher richness of host species is associated with a lowered disease risk. The proposed mechanism driving this pattern is an increased likelihood in species-rich...
Resource Type:: Article
Full Text:: amplification. Am J Trop Med Hyg 80: 268–278. 16. Villari P, Spielman A, Komar N, McDowell M, Timperi RJ (1995

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: Durkin6, Daniel A. Kluepfel7, W. Patrick Wechter8, Anne J. Anderson9, Young Cheol Kim10, Leland S

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Creator:: Fahlgren, Noah, Bollmann, Stephanie R., Kasschau, Kristin D., Cuperus, Josh T., Press, Caroline M., Sullivan, Christopher M., Chapman, Elisabeth J., Hoyer, J. Steen, Gilbert, Kerrigan B., Grunwald, Niklaus J., and Carrington, James C.
Abstract:: In eukaryotes, RNA silencing pathways utilize 20-30-nucleotide small RNAs to regulate gene expression, specify and maintain chromatin structure, and repress viruses and mobile genetic elements. RNA silencing was likely present in the common ancestor of modern eukaryotes, but most research has focused on plant and animal RNA silencing systems. Phytophthora...
Resource Type:: Article
Full Text:: , Elisabeth J. Chapman2¤b, J. Steen Hoyer1, Kerrigan B. Gilbert1, Niklaus J. Grünwald3*, James C

The Classification of the Common Orders of Plants Found Around Corvallis

Creator:: King, Bertha Anna and Starr, Grace E.
Abstract:: In collecting our representative flowering plants, we have endeavored to secure a specimen of each common genus of annuals and biennials as well as a few shrubs. The notes, drawings, and classification of fifty of these plants constitute the main part of our thesis. Following are the classifications of various...
Resource Type:: Undergraduate Thesis
Full Text:: . Rosa. R. n&ana Wild rose. Common everywhere. BloSsoms from May till July. PlateXXI 2. Dryadeae

ScholarsArchive@OSU

The Effect of Iron Limitation on the Transcriptome and Proteome of Pseudomonas fluorescens Pf-5

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

Infection of Brachypodium distachyon by Formae Speciales of Puccinia graminis: Early Infection Events and Host-Pathogen Incompatibility

Risk of Exposure to Eastern Equine Encephalomyelitis Virus Increases with the Density of Northern Cardinals

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

The Classification of the Common Orders of Plants Found Around Corvallis

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