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Filtering by: Has journal Journal of Extension Remove constraint Has journal: Journal of Extension Academic Affiliation Botany and Plant Pathology Remove constraint Academic Affiliation: Botany and Plant Pathology Rights Statement No Copyright - United States Remove constraint Rights Statement: No Copyright - United States

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Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P-humuli Using RNA Sequencing and Genotyping-By-Sequencing

Creator:

Summers, Carly F., Gulliford, Colwyn M., Carlson, Craig H., Lillis, Jacquelyn A., Carlson, Maryn O., Cadle-Davidson, Lance, Gent, David H., and Smart, Christine D.

Abstract:

RNA sequencing (RNA-seq) and genotyping-by-sequencing (GBS) were used for single nucleotide polymorphism (SNP) identification from two economically important obligate plant pathogens, Pseudoperonospora cubensis and P. humuli. Twenty isolates of P. cubensis and 19 isolates of P. humuli were genotyped using RNA-seq and GBS. Principle components analysis (PCA) of each data...

Resource Type:

Article

Full Text:

Identification of Genetic Variation between Obligate Plant
Brown rot of fruits and fruit trees in Oregon

Creator:

Posey, Gilbert Bradley

Resource Type:

Masters Thesis

Full Text:

Brown rot of fruits and fruit trees in Oregon THESIS
Risk of Exposure to Eastern Equine Encephalomyelitis Virus Increases with the Density of Northern Cardinals

Creator:

Estep, Laura K., McClure, Christopher J. W., Vander Kelen, Patrick, Burkett-Cadena, Nathan D., Sickerman, Stephen, Hernandez, José, Jinright, Joseph, Hunt, Brenda, Lusk, John, Hoover, Victor, Armstrong, Keith, Stark, Lillian M., Hill, Geoffrey E., and Unnasch, Thomas R.

Abstract:

For a variety of infectious diseases, the richness of the community of potential host species has emerged as an important factor in pathogen transmission, whereby a higher richness of host species is associated with a lowered disease risk. The proposed mechanism driving this pattern is an increased likelihood in species-rich...

Resource Type:

Article

Full Text:

extension, the relative abundances of species with large amplification fractions may contribute the most
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:

Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.

Abstract:

Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd

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Article

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ppat.1003037 1..26 Diverse Lifestyles and Strategies of Plant
Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Creator:

Schroeder, Hilke, Cronn, Richard, Yanbaev, Yulai, Jennings, Tara, Mader, Malte, Degen, Bernd, and Kersten, Birgit

Abstract:

To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...

Resource Type:

Article

Full Text:

: Hardwood lumber and veneer series. Purdue Extension (2007); FNR-292- W. 2. US Department of Justice
Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Creator:

Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J., Manning, Viola A., Mankaney, Aakash N., Mockler, Todd C., and Ciuffetti, Lynda M.

Abstract:

Pyrenophora tritici-repentis (Ptr), a necrotrophic fungus and the causal agent of tan spot of wheat, produces one or a combination of host-selective toxins (HSTs) necessary for disease development. The two most studied toxins produced by Ptr, Ptr ToxA (ToxA) and Ptr ToxB (ToxB), are proteins that cause necrotic or chlorotic...

Resource Type:

Article

Full Text:

pone.0040240 1..16 Host-Selective Toxins of Pyrenophora tritici
Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Creator:

Staton, Margaret, Best, Teodora, Khodwekar, Sudhir, Owusu, Sandra, Xu, Tao, Xu, Yi, Jennings, Tara, Cronn, Richard, Arumuganathan, A. Kathiravetpilla, Coggeshall, Mark, Gailing, Oliver, Liang, Haiying, Romero-Severson, Jeanne, Schlarbaum, Scott, and Carlson, John E.

Abstract:

Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native...

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Article

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Preliminary Genomic Characterization of Ten Hardwood
Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:

Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.

Abstract:

We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...

Resource Type:

Article

Full Text:

pgen.1002784 1..27 Comparative Genomics of Plant-Associated
Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:

Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.

Abstract:

We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...

Resource Type:

Article

Full Text:

pgen.1002784 1..27 Comparative Genomics of Plant-Associated
Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Creator:

Fahlgren, Noah, Bollmann, Stephanie R., Kasschau, Kristin D., Cuperus, Josh T., Press, Caroline M., Sullivan, Christopher M., Chapman, Elisabeth J., Hoyer, J. Steen, Gilbert, Kerrigan B., Grunwald, Niklaus J., and Carrington, James C.

Abstract:

In eukaryotes, RNA silencing pathways utilize 20-30-nucleotide small RNAs to regulate gene expression, specify and maintain chromatin structure, and repress viruses and mobile genetic elements. RNA silencing was likely present in the common ancestor of modern eukaryotes, but most research has focused on plant and animal RNA silencing systems. Phytophthora...

Resource Type:

Article

Full Text:

. Carrington1,2* 1Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America, 2Center

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Academic Affiliation

Botany and Plant Pathology[remove]19
Crop and Soil Science2

Advisor

Barss, H. P.3
Jackson, H. S.1

Commencement Year

Commencement Year range begin – Commencement Year range end

Current results range from 1911 to 1924

View distribution

Unknown 14

Creator

Gent, David H.3
Allen, Andrew E.2
Anderson, Anne J.2
Blumhagen, Rachel2
Breakwell, Katy2
more Creators »

Contributor

Roberts, Rachel1

Date

Date range begin – Date range end

Current results range from 1911 to 2019

View distribution

Decade

2010-201914
1920-19291
1910-19194

Degree Field

Botany5

Degree Level

Master's5

Degree Name

Master of Science (M.S.)5

Language

English [eng]19

License

CC0 1.0 Universal9
Public Domain Mark 1.03
Attribution 4.0 (CC BY 4.0)1

Location

Pacific Northwest, United States1
Willamette Valley, Multnomah County, Oregon, United States1

Non-Academic Affiliation

Oregon State University. Graduate School5
Oregon State University. Agricultural Experiment Station1
Oregon State University. Center for Genome Research and Biocomputing1

Peer Reviewed

Yes13
No6

Resource Type

Article13
Masters Thesis5
Dataset1

Rights Statement

No Copyright - United States[remove]19

Subject

Brown rot1
Brown rot of fruit1
Cherry -- Diseases and pests -- Oregon1
Formaldehyde1
Gummosis1
more Subjects »

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