Index Catalog // ScholarsArchive@OSU

Characterisation of virulence reactions for Heterodera avenae populations from two localities in Algeria

Creator:: Haddadi, Fatima, Mokabli, Aissa, and Smiley, Richard W.
Abstract:: Heterodera avenae is widely distributed in areas where most cereal crops are produced in Algeria. However, the virulence of the Algerian populations of this nematode on individual cereal species and cultivars has not been well documented. The virulence of H. avenae populations from Tiaret and from Oued Smar were tested...
Resource Type:: Article
Full Text:: 1 , Aïssa MOKABLI 2 , and Richard W. SMILEY 3 1 Faculté des Sciences Biologiques

Repeat intercontinental dispersal and Pleistocene speciation in disjunct Mediterranean and desert Senecio (Asteraceae)

Creator:: Coleman, Max, Liston, Aaron, Kadereit, Joachim W., and Abbott, Richard J.
Abstract:: To explore the biogeographic history of Mediterranean/arid plant disjunctions, Old and New World Senecio sect. Senecio were analyzed phylogenetically using nuclear ribosomal DNA sequences (ITS). A clade corresponding to sect. Senecio was strongly supported. Area optimization indicated this clade to be of southern African origin. The Mediterranean and southern African...
Resource Type:: Article
Full Text:: MEDITERRANEAN AND DESERT SENECIO (ASTERACEAE)1 MAX COLEMAN,2 AARON LISTON,3 JOACHIM W. KADEREIT,4 AND RICHARD J

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

Creator:: Parks, Matthew, Cronn, Richard, and Liston, Aaron
Abstract:: Background: Through next-generation sequencing, the amount of sequence data potentially available for phylogenetic analyses has increased exponentially in recent years. Simultaneously, the risk of incorporating ‘noisy’ data with misleading phylogenetic signal has also increased, and may disproportionately influence the topology of weakly supported nodes and lineages featuring rapid radiations and/or...
Resource Type:: Article
Full Text:: Pinus L. (Pinaceae) Matthew Parks1*, Richard Cronn2 and Aaron Liston1 Abstract Background: Through next

Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing

Creator:: Njuguna, Wambui, Liston, Aaron, Cronn, Richard, Ashman, Tia-Lynn, and Bassil, Nahla
Abstract:: The cultivated strawberry is one of the youngest domesticated plants, developed in France in the 1700s from chance hybridization between two western hemisphere octoploid species. However, little is known about the evolution of the species that gave rise to this important fruit crop. Phylogenetic analysis of chloroplast genome sequences of...
Resource Type:: Article
Full Text:: of Fragaria based on whole chloroplast genome sequencing Wambui Njuguna a,⇑, Aaron Liston b, Richard

Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci

Creator:: Syring, John, Willyard, Ann, Cronn, Richard, and Liston, Aaron
Abstract:: Sequence data from nrITS and cpDNA have failed to fully resolve phylogenetic relationships among Pinus species. Four low‐copy nuclear genes, developed from the screening of 73 mapped conifer anchor loci, were sequenced from 12 species representing all subsections. Individual loci do not uniformly support either the nrITS or cpDNA hypotheses...
Resource Type:: Article
Full Text:: MULTIPLE LOW-COPY NUCLEAR LOCI1 JOHN SYRING,2 ANN WILLYARD,2 RICHARD CRONN,3 AND AARON LISTON2,4

Comments Regarding the Binary Power Law for Heterogeneity of Disease Incidence

Creator:: Turechek, W. W., Madden, L. V., and Gent, D. H.
Abstract:: The binary power law (BPL) has been successfully used to characterize heterogeneity (overdispersion or small-scale aggregation) of disease incidence for many plant pathosystems. With the BPL, the log of the observed variance is a linear function of the log of the theoretical variance for a binomial distribution over the range...
Resource Type:: Article
Full Text:: for Heterogeneity of Disease Incidence W. W. Turechek, L. V. Madden, D. H. Gent, and X.-M. Xu

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

Creator:: Cronn, Richard, Liston, Aaron, Parks, Matthew, Gernandt, David S., Shen, Rongkun, and Mockler, Todd
Abstract:: Organellar DNA sequences are widely used in evolutionary and population genetic studies, however, the conservative nature of chloroplast gene and genome evolution often limits phylogenetic resolution and statistical power. To gain maximal access to the historical record contained within chloroplast genomes, we have adapted multiplex sequencing-by-synthesis (MSBS) to simultaneously sequence...
Resource Type:: Article
Full Text:: First published online 27 Aug 2008; Nucleic Acids Res. Richard Cronn, Aaron Liston, Matthew Parks

Kinetic characterization of the soluble butane monooxygenase from Thauera butanivorans, formerly ‘Pseudomonas butanovora’

Creator:: Cooley, Richard B., Dubbels, Bradley L., Sayavedra-Soto, Luis A., Bottomley, Peter J., and Arp, Daniel J.
Abstract:: Soluble butane monooxygenase (sBMO), a three-component di-iron monooxygenase complex expressed by the C2–C9 alkane-utilizing bacterium Thauera butanivorans, was kinetically characterized by measuring substrate specificities for C1–C5 alkanes and product inhibition profiles. sBMO has high sequence homology with soluble methane monooxygenase (sMMO) and shares a similar substrate range, including gaseous and...
Resource Type:: Article
Full Text:: monooxygenase from Thauera butanivorans, formerly ‘Pseudomonas butanovora’ Richard B. Cooley,1 Bradley L

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Creator:: Schroeder, Hilke, Cronn, Richard, Yanbaev, Yulai, Jennings, Tara, Mader, Malte, Degen, Bernd, and Kersten, Birgit
Abstract:: To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Resource Type:: Article
Full Text:: Schroeder1*, Richard Cronn2, Yulai Yanbaev3, Tara Jennings4, Malte Mader1, Bernd Degen1, Birgit Kersten1 1

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: Henrissat3, Conrad L. Schoch4, Benjamin A. Horwitz5, Kerrie W. Barry1, Bradford J. Condon6, Alex C

ScholarsArchive@OSU

Characterisation of virulence reactions for Heterodera avenae populations from two localities in Algeria

Repeat intercontinental dispersal and Pleistocene speciation in disjunct Mediterranean and desert Senecio (Asteraceae)

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing

Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci

Comments Regarding the Binary Power Law for Heterogeneity of Disease Incidence

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

Kinetic characterization of the soluble butane monooxygenase from Thauera butanivorans, formerly ‘Pseudomonas butanovora’

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

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