Index Catalog // ScholarsArchive@OSU

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

Creator:: Avraham, Shulamit, Tung, Chih-Wei, Ilic, Katica, Jaiswal, Pankaj, Kellogg, Elizabeth A., McCouch, Susan, Pujar, Anuradha, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Stevens, Peter, Vincent, Leszek, Zapata, Felipe, and Ware, Doreen
Abstract:: The Plant Ontology Consortium (POC, http://www.plantontology.org) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants. The ontology allows users to ascribe attributes of plant structure (anatomy and morphology) and developmental stages...
Resource Type:: Article

Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages

Creator:: Jaiswal, Pankaj, Avraham, Shulamit, Ilic, Katica, Kellog, Elizabeth, A., McCouch, Susan, Pujar, Anuradha, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Stevens, Peter, Vincent, Leszek, Ware, Doreen, and Zapata, Felipe
Abstract:: The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative effort among several plant databases and experts in plant systematics, botany and genomics. A primary goal of the POC is to develop simple yet robust and extensible controlled vocabularies that accurately reflect the biology of plant structures and developmental stages. These...
Resource Type:: Article
Full Text:: stages Jaiswal, P., Avraham, S., Ilic, K., Kellogg, E. A., McCouch, S., Pujar, A., ... & Zapata, F

Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology

Creator:: Pujar, Anuradha, Jaiswal, Pankaj, Kellogg, Elizabeth A., Ilic, Katica, Vincent, Leszek, Avraham, Shulamit, Stevens, Peter, Zapata, Felipe, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Ware, Doreen, and McCouch, Susan
Abstract:: Plant growth stages are identified as distinct morphological landmarks in a continuous developmental process. The terms describing these developmental stages record the morphological appearance of the plant at a specific point in its life cycle. The widely differing morphology of plant species consequently gave rise to heterogeneous vocabularies describing growth...
Resource Type:: Article
Full Text:: Biology Pujar, A., Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, S., ... & McCouch, S

Development of Computational, Visualization, and Molecular Tools for Fungal and Oomycete Community Ecology

Creator:: Foster, Zachary Stephen Longiaru
Abstract:: Oomycetes are an important group of organisms with a variety of ecological roles similar to fungi. Although many are well-studied plant pathogens known for their devastating effects on agricultural systems, most are little-studied saprobes and parasites of plants and animals in nearly every ecosystem on earth. The advent of affordable...
Resource Type:: Dissertation
Full Text:: Weiland, Carolyn Scagel, and Felipe Albornoz. The advice of my committee, which included Niklaus Grünwald

Understanding Host-Pathogen Interactions in the Sphaerulina musiva-Populus Pathosystem

Creator:: Dunnell, Kelsey Liann
Abstract:: Host-parasite interactions between the pathogen, Sphaerulina musiva, and its host, Populus spp., were examined in a series of studies. In the first study, variation in resistance of Populus nigra from 7 locations in Europe was differentiated based on the parameters cankers per cm and disease severity score. The analysis evaluated...
Resource Type:: Dissertation
Full Text:: the genetic basis of the interaction between S. musiva and P. trichocarpa. RNA-seq was used to

The phytoplankton and limnological characteristics of Lago Rupanco, Osorno, Chile

Creator:: Donoso, Teresa G.
Abstract:: Lago Rupanco is located in the central plain of Chile (Borgel, 1964) at 40° 50' S; 72° 30' W. It lies at 117 m above sea level, and corresponds to type 28c of Hutchinson's (1967) classification. Lago Rupanco is a warm, monomictic lake, with winter circulation and summer stratification. Physical,...
Resource Type:: Masters Thesis
Full Text:: '. Phinney Lago Rupanco is located in the central plain of Chile (Borgel, 1964) at 40° 50' S; 72° 30' W. It

Studies on the etiology and epidemiology of bull's eye rot of pears

Creator:: Henriquez, Jose Luis, 1961-
Abstract:: The objective of this dissertation is to introduce low-cost processing methods for the fabrication of ZnO transparent thin-film transistors (TTFTs). A novel method for depositing ZnO body layers via spin-coating of a zinc nitrate-based spin solution is presented. The processing conditions of spin-coated ZnO are optimized to produce continuous and...
Resource Type:: Dissertation
Full Text:: DEDICATION This thesis is dedicated to my wife Lorena and my children, Felipe and Morin, for all their

Diagnosis and Etiology of a Soilborne Disease Complex of Winter Squash (Cucurbita maxima) in the Willamette Valley, OR

Creator:: Rivedal, Hannah M.
Abstract:: Winter squash (Cucurbita maxima) grown in Oregon’s Willamette Valley for edible seed, frozen foods, and fresh markets is susceptible to an undiagnosed soilborne disease. Diseased squash fields exhibit symptoms of stunting, root and crown rot, vascular discoloration, and late-season wilt, which in extreme cases can lead to total crop failure....
Resource Type:: Dissertation
Full Text:: . oxysporum, P. cucumerina, and S. terrestris. Some treatments of mixed species inoculum produced symptoms

Integration of Evolutionary Theory and Genomics to Understand Processes Involved in Host Adaptation and Divergence in Phytophthora Plant Pathogens

Creator:: Tabima, Javier F.
Abstract:: Modern plant pathology benefits from integrating methods and concepts from evolutionary biology. For example, evolutionary concepts are used to identify and examine species boundaries of plant pathogens, recognize processes underlying pathogen biogeography, identify traits that characterize emerging species, and discover new molecular interactions that originate under processes of selection. In...
Resource Type:: Dissertation
Full Text:: OF THE DISSERTATION OF Javier Felipe Tabima Restrepo for the degree of Doctor of Philosophy in

Drivers of Soil Fungal Communities Across Three Tropical Rainforests in Panama

Creator:: Schappe, Tyler
Abstract:: Fungi play critical roles in ecosystem processes and interact with plant communities in mutualistic, pathogenic, and commensal ways. Fungal communities are thought to be influenced by both associated tree communities and soil properties. However, the relative importance of the biotic and abiotic drivers of soil fungal community structure and diversity...
Resource Type:: Masters Thesis
Full Text:: Collins, Brian Atkinson, Ian Morelan, Felipe Albornoz, Dusty Gannon, Kristen Finch, and Ivania Cerón

ScholarsArchive@OSU

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages

Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology

Development of Computational, Visualization, and Molecular Tools for Fungal and Oomycete Community Ecology

Understanding Host-Pathogen Interactions in the Sphaerulina musiva-Populus Pathosystem

The phytoplankton and limnological characteristics of Lago Rupanco, Osorno, Chile

Studies on the etiology and epidemiology of bull's eye rot of pears

Diagnosis and Etiology of a Soilborne Disease Complex of Winter Squash (Cucurbita maxima) in the Willamette Valley, OR

Integration of Evolutionary Theory and Genomics to Understand Processes Involved in Host Adaptation and Divergence in Phytophthora Plant Pathogens

Drivers of Soil Fungal Communities Across Three Tropical Rainforests in Panama

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