Index Catalog // ScholarsArchive@OSU

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

Creator:: Quandt, C. Alisha, Di, Yanming, Elser, Justin, Jaiswal, Pankaj, and Spatafora, Joseph W.
Abstract:: This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by the Genetics Society of America. The published article can be found at: https://doi.org/10.1534/g3.116.027045
Resource Type:: Article
Full Text:: ophioglossoides C. Alisha Quandt,*,1 Yanming Di,† Justin Elser,* Pankaj Jaiswal,* and Joseph W. Spatafora

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Creator:: Bushley, Kathryn E., Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S., Nonogaki, Mariko, Boyd, Alexander E., Owensby, C. Alisha, Knaus, Brian J., Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L., and Spatafora, Joseph W.
Abstract:: The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was first isolated, is presented along with comparative analyses of the biosynthesis of...
Resource Type:: Article

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

Creator:: Condon, Bradford J., Leng, Yueqiang, Wu, Dongliang, Bushley, Kathryn E., Ohm, Robin A., Otillar, Robert, Martin, Joel, Schackwitz, Wendy, Grimwood, Jane, MohdZainudin, NurAinIzzati, Xue, Chunsheng, Wang, Rui, Manning, Viola A., Dhillon, Braham, Tu, Zheng Jin, Steffenson, Brian J., Salamov, Asaf, Sun, Hui, Lowry, Steve, LaButti, Kurt, Han, James, Copeland, Alex, Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Baker, Scott E., Ciuffetti, Lynda M., Grigoriev, Igor V., Zhong, Shaobin, and Turgeon, B. Gillian
Abstract:: The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary...
Resource Type:: Article
Full Text:: , Zheng Jin Tu9, Brian J. Steffenson10, Asaf Salamov4, Hui Sun4, Steve Lowry4, Kurt LaButti4, James Han4

The Primary Disease Gradient of Wheat Stripe Rust (Puccinia striiformis f. sp. tritici) Across Spatial Scales

Creator:: Farber, Daniel
Abstract:: Wheat stripe rust (WSR), also called yellow rust of wheat (Tricitum spp.), causal agent Puccinia striiformis f.sp. tritici (Pst), is a foliar disease of major economic importance on wheat, especially grown in temperate locations. WSR causes major losses of wheat yield, estimated at nearly $ 1 billion per year, and...
Resource Type:: Dissertation
Full Text:: alternate host was only recently identified (Jin, Szabo, and Carson 2010).In the Pacific Northwest, only

Host jumping onto close relatives and across kingdoms by Tyrannicordyceps (Clavicipitaceae) gen. nov. and Ustilaginoidea_(Clavicipitaceae)

Creator:: Kepler, Ryan M., Sung, Gi-Ho, Harada, Yukio, Tanaka, Kazuaki, Tanaka, Eiji, Hosoya, Tsuyoshi, Bischoff, Joseph F., and Spatafora, Joseph W.
Abstract:: Premise of study: This research seeks to advance understanding of conditions allowing movement of fungal pathogens among hosts. The family Clavicipitaceae contains fungal pathogens exploiting hosts across three kingdoms of life in a pattern that features multiple interkingdom host shifts among plants, animals, and fungi. The tribe Ustilaginoideae potentially represents...
Resource Type:: Article

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

Creator:: Cronn, Richard, Liston, Aaron, Parks, Matthew, Gernandt, David S., Shen, Rongkun, and Mockler, Todd
Abstract:: Organellar DNA sequences are widely used in evolutionary and population genetic studies, however, the conservative nature of chloroplast gene and genome evolution often limits phylogenetic resolution and statistical power. To gain maximal access to the historical record contained within chloroplast genomes, we have adapted multiplex sequencing-by-synthesis (MSBS) to simultaneously sequence...
Resource Type:: Article
Full Text:: most abundant class of repeat in the reference genomes, and they exceeded di- through tetranucleotide

Role of GacSA Two-component System and Bacterial Surface Attachment in Pseudomonas syringae Virulence

Creator:: O'Malley, Megan R.
Abstract:: Pseudomonas syringae are plant pathogenic bacteria that cause disease by rapidly multiplying within the aboveground tissues of host plants. Growth of P. syringae within plant host tissues requires the disarmament of host immune defenses that limit microbial growth. To combat host defenses, P. syringae deploys a type III secretion system...
Resource Type:: Dissertation
Full Text:: for sharing your lives with me and making mine so bright. To Pat and May Di Bello – thank you for

A two-component regulatory system controlling antibiotic production by Pseudomonas flourescens Pf-5

Creator:: Corbell, Nathan
Abstract:: Tn5 mutagenesis of apdA (for antibiotic production) and deletion of gacA (for global antibiotic and cyanide) resulted in the same pleiotropic phenotype in Pseudomonas fluorescens (i.e. production of an array of secondary metabolites including the antibiotics pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol as well as a tryptophan-side-chain oxidase, hydrogen cyanide, and an...
Resource Type:: Dissertation

Systematic, genomic, and transcriptomic analysis of mycoparasitic Tolypocladium species and their Elaphomyces hosts

Creator:: Quandt, C. Alisha
Abstract:: Fungi in the genus Tolypocladium are diverse in their host associations, but the predominant ecologies include parasites of the ectomycorrhizal genus Elaphomyces and pathogens of insects. The aim of this dissertation research is to examine the evolution of these fungi and their host associations. To accomplish this several lines of...
Resource Type:: Dissertation
Full Text:: , analyze, and edit the experiment and article. Yanming Di helped with statistical analysis and

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

Creator:: Carbonell, Alberto, Fahlgren, Noah, Garcia-Ruiz, Hernan, Gilbert, Kerrigan B., Montgomery, Taiowa A., Nguyen, Tammy, Cuperus, Josh T., and Carrington, James C.
Abstract:: In RNA-directed silencing pathways, ternary complexes result from small RNA-guided ARGONAUTE (AGO) associating with target transcripts. Target transcripts are often silenced through direct cleavage (slicing), destabilization through slicer-independent turnover mechanisms, and translational repression. Here, wild-type and active-site defective forms of several Arabidopsis thaliana AGO proteins involved in posttranscriptional silencing were...
Resource Type:: Article

ScholarsArchive@OSU

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

The Primary Disease Gradient of Wheat Stripe Rust (Puccinia striiformis f. sp. tritici) Across Spatial Scales

Host jumping onto close relatives and across kingdoms by Tyrannicordyceps (Clavicipitaceae) gen. nov. and Ustilaginoidea_(Clavicipitaceae)

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

Role of GacSA Two-component System and Bacterial Surface Attachment in Pseudomonas syringae Virulence

A two-component regulatory system controlling antibiotic production by Pseudomonas flourescens Pf-5

Systematic, genomic, and transcriptomic analysis of mycoparasitic Tolypocladium species and their Elaphomyces hosts

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

Limit your search

Academic Affiliation

Advisor

Commencement Year

Committee Member

Creator

Contributor

Date

Decade

Degree Field

Degree Level

Degree Name

File Format

Language

License

Location

Non-Academic Affiliation

Peer Reviewed

Resource Type

Rights Statement

Subject

Search Constraints

Search Results

Limit your search